PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g061950.1.1

Common Name

LOC101251029

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 174aa MW: 20138.1 Da PI: 9.3256

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g061950.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.9	4.6e-12	15	59	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ien++ r v+fskR+++++ A+ + ++a+v v++fs++gk Solyc09g061950.1.1 15 KLIENERARMVSFSKRKKTLFEDAHKFATRTGADVGVMLFSPSGK 59 569*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.381	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-15	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-19	8	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-8	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-17	17	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-8	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-8	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MENENKKGKQ KIEMKLIENE RARMVSFSKR KKTLFEDAHK FATRTGADVG VMLFSPSGKP 60 YSNDSATIAD IIDRFLKVKQ EDHKRDYAEG ESNGFEALKD LHKELQAWND KEKKRKLMHK 120 IMHPSLEIPS DKHMEEQKLA LKLKVEKFKN EIQSAITTEH LKFDLNVVPD PEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g061950.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247303.1	1e-124	agamous-like MADS-box protein AGL29
TrEMBL	A0A3Q7I4P3	1e-123	A0A3Q7I4P3_SOLLC; Uncharacterized protein
STRING	Solyc09g061950.1.1	1e-123	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	4e-16	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Solyc09g061950.1.1
Entrez Gene	101251029

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]