PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g059520.2.1
Common NameLOC101251320
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 390aa    MW: 44921.5 Da    PI: 4.4025
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g059520.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.3e-35141062103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k ye++ede+++ lisw+++++sf+++d  +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF ++sF kg+k+
  Solyc09g059520.2.1  14 FLLKCYEMVEDESTDGLISWNQSEKSFIIWDVPKFSSELLPKYFKHSNFSSFIRQLNIYGFHKTDTDR---------WEFLNDSFVKGQKH 95 
                         9***************************************************************9999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                          l++i r+k++
  Solyc09g059520.2.1  96 FLKNIVRRKQS 106
                         *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.75E-3310103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.8E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVKSFENGVS VAPFLLKCYE MVEDESTDGL ISWNQSEKSF IIWDVPKFSS ELLPKYFKHS  60
NFSSFIRQLN IYGFHKTDTD RWEFLNDSFV KGQKHFLKNI VRRKQSSVAQ KKPSQLEEIK  120
SCTSEESKNL ELWKEVENLK DERNVLTQEL VKLKEHQQNS ESKLILLREQ LKVREKNQQQ  180
MLSFIVMAMQ SPSFLVQFFQ PKENSWCMSE NGNNILSEVE DDCVDTPSDR AIVRYHPPTH  240
EEAAETLLCA EPEPALDSQK PMELDFSSNE LKDMFSNIDF FSGLMDEKLL AFENRVPLTL  300
PYHPDDDNLL EQLLLSSPIT ENNEGEVMDN PACSHTGMET DLESGTFSGS EEPFHSLEDK  360
KMEMDLLETQ SDNLSNMDIL AEQLGHSKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-211010916125Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.191800.0callus| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g059520.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142300.0Lycopersicon esculentum clone 133429F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247072.10.0heat stress transcription factor A-8
TrEMBLA0A3Q7I4190.0A0A3Q7I419_SOLLC; Uncharacterized protein
STRINGSolyc09g059520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Representative plantOGRP1084768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.18e-80heat shock transcription factor A8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]