PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g057880.2.1 | ||||||||
Common Name | LOC101266066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 262aa MW: 29680.6 Da PI: 7.2372 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.3 | 8.1e-26 | 95 | 185 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA++vGF +r+++ ++s+ +++ +r++ C+k+g+ + k+++ r+ r++tr gCka+l vk +k++kw+vt++++eH+H+l+p Solyc09g057880.2.1 95 EFYDYYARRVGFIMRIDQCRRSEVDKRSLSRRLSCNKQGHYVKMKNHHGPPRKARTSTREGCKAMLLVKVNKSDKWVVTRFVKEHTHQLVP 185 6**********************************************9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-23 | 95 | 185 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT 60 TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY ARRVGFIMRI DQCRRSEVDK 120 RSLSRRLSCN KQGHYVKMKN HHGPPRKART STREGCKAML LVKVNKSDKW VVTRFVKEHT 180 HQLVPSGCSS GNAMDKKDRR IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELMSKKI 240 QVAVNNVKEV EAEVQKQPNS K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15191 | 0.0 | callus| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g057880.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010326278.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_025888596.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
Refseq | XP_025888597.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2 isoform X1 | ||||
TrEMBL | A0A3Q7I1N9 | 0.0 | A0A3Q7I1N9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g057880.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 | Representative plant | OGRP3376 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-57 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g057880.2.1 |
Entrez Gene | 101266066 |
Publications ? help Back to Top | |||
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