PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g057550.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 75aa    MW: 8783.38 Da    PI: 9.8784
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g057550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.75.4e-1528691556
                        HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        L ++F+k+++p++++ ++LA++ gL+ +qV +WFqNrR + k
  Solyc09g057550.1.1 28 LLRFFKKCPHPDEDQQKQLASEAGLDHKQVMFWFQNRRDQAK 69
                        7899**********************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00611370IPR001356Homeobox domain
CDDcd000863.17E-101465No hitNo description
SuperFamilySSF466891.24E-131569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-132669IPR009057Homeodomain-like
PROSITE profilePS5007112.6332871IPR001356Homeobox domain
PfamPF000461.8E-122869IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MSSLKFNVFQ IFAPKSQTIY FPLCLIPLLR FFKKCPHPDE DQQKQLASEA GLDHKQVMFW  60
FQNRRDQAKV ILII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g057550.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109307e-58Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888845.14e-22homeobox-leucine zipper protein ROC8-like
TrEMBLK4CTE74e-47K4CTE7_SOLLC; Uncharacterized protein
STRINGSolyc09g057550.1.16e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2933122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34650.11e-15homeodomain GLABROUS 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]