PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g055650.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 341aa    MW: 39521.6 Da    PI: 6.6092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g055650.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-1899145148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd +l ++vkq+G ++W+ Ia+ m  gR +kqc++rw+++l
  Solyc09g055650.1.1  99 KGQWTEEEDRILMKLVKQFGLKRWAQIAENMV-GRAGKQCRERWHNHL 145
                         799*****************************.*************97 PP
2Myb_DNA-binding51.72e-16151193145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +  W++eE+  lv+a+kq G++ W+ I ++++ gRt++ +k++w+
  Solyc09g055650.1.1 151 KETWSEEEEVMLVEAHKQIGNK-WAEIGKRIP-GRTENAIKNHWN 193
                         578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.13794149IPR017930Myb domain
SuperFamilySSF466897.86E-3098192IPR009057Homeodomain-like
SMARTSM007172.4E-1698147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-27100153IPR009057Homeodomain-like
CDDcd001679.59E-15102145No hitNo description
PfamPF139213.1E-19102160No hitNo description
PROSITE profilePS5129420.481150200IPR017930Myb domain
SMARTSM007175.4E-15150198IPR001005SANT/Myb domain
CDDcd001671.24E-10153196No hitNo description
Gene3DG3DSA:1.10.10.602.2E-19154199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEGGDREGNH YDLPYNFSFY QQFPAPLTDI NRLLWSNQNV FTHQHAGGCY DGTSGYNSNF  60
PEQSLKNNVN IEENGAQYWI NQEQKKTGKN AKEVTMLVKG QWTEEEDRIL MKLVKQFGLK  120
RWAQIAENMV GRAGKQCRER WHNHLRPDIK KETWSEEEEV MLVEAHKQIG NKWAEIGKRI  180
PGRTENAIKN HWNATKRRQI SRRNKLKKEE RSNVLQDYIR SKYFSDDMSI SSSSSTTPPT  240
NDNNNMKNPC PYLYPYSDDD DDDTPSLLTN QTYDDEMNFM QKLFGNNSLD GANMTTQHQL  300
YLHQAEYDQA ASSSFSSGRN KDMVLSSSYP DQQTSTNKFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-45962001105C-Myb DNA-Binding Domain
1msf_C8e-45962001105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201208RRNKLKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g055650.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071100.10.0transcription factor MYB119-like
TrEMBLM1DRH71e-142M1DRH7_SOLTU; Uncharacterized protein
STRINGSolyc09g055650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-62myb domain protein 98
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]