PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g015110.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 224aa MW: 25675 Da PI: 4.347

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g015110.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.9	3e-12	48	86	10	48
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48 + +e Lee+F +n++p + + +L++ lgL+ +qVk+WF Solyc09g015110.1.1 48 QIIEKLEEVFSQNPNPGNDVIDQLSEDLGLDATQVKIWF 86 56899********************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.84E-10	36	99	IPR009057	Homeodomain-like
SMART	SM00389	0.0022	38	100	IPR001356	Homeobox domain
CDD	cd00086	2.06E-9	47	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-10	48	87	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-9	48	86	IPR001356	Homeobox domain
PROSITE profile	PS50071	10.787	50	96	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MNFICSSPFY FLSCFILLSF MTSQNDACVG SSSGQHIGKS IFQHSYQQII EKLEEVFSQN 60 PNPGNDVIDQ LSEDLGLDAT QVKIWFYDKG NDIKAQQIME EQSKIEHLKN KIMYSENFQM 120 CLNLKQQFCA ASNNPEQQRA ILQDLLNEYA KFGEDVMMIS KIIDHFIEDM EGYHDILFSE 180 FESKLDSLSN YKDPKGLDLE LRLGYYKDPN GLDLELKLGL KSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g015110.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010325776.2	1e-163	homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
TrEMBL	A0A3Q7IVK1	1e-161	A0A3Q7IVK1_SOLLC; Uncharacterized protein
STRING	Solyc09g015110.1.1	1e-162	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15229	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	8e-11	homeodomain GLABROUS 11

Link Out ? help Back to Top
Phytozome	Solyc09g015110.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]