PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g010960.2.1

Common Name

LOC101254521

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 291aa MW: 32373.9 Da PI: 5.158

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g010960.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	6.1e-32	115	171	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+vers+++p++++itYeg H h Solyc09g010960.2.1 115 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCGAKKQVERSSDEPNTFIITYEGLHLH 171 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-29	109	171	IPR003657	WRKY domain
PROSITE profile	PS50811	27.313	109	174	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-27	111	171	IPR003657	WRKY domain
SMART	SM00774	2.7E-36	114	173	IPR003657	WRKY domain
Pfam	PF03106	4.7E-26	115	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MLMEKYSWSY EDELIKELLD DESPFFFAPQ HDSTTSSSDN YCSLDVTKSS ISSFSSWPNN 60 IHDDIESGLS MTSNGLIQSH DARNLGLGRG LDMMMNKHEA KYTLRIQTCG NAMADDGYKW 120 RKYGQKSIKN SPYPRSYYKC TNPRCGAKKQ VERSSDEPNT FIITYEGLHL HFAYPFITLD 180 PPQSLNQPNK KPKVTDSKAH NYESENTSGV DESPALVNPC SIVDLEQGLG FGEMGSQGLG 240 LDRMGSQGLL EDMVPLMVRN PSINKPTNSY SSSCSYSSPP TSPSFSWSNN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	113	171	16	74	Probable WRKY transcription factor 4
2lex_A	2e-21	113	171	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g010960.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246870.1	0.0	probable WRKY transcription factor 49
TrEMBL	A0A3Q7I011	0.0	A0A3Q7I011_SOLLC; Uncharacterized protein
STRING	Solyc09g010960.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	8e-42	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	Solyc09g010960.2.1
Entrez Gene	101254521

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]