PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g010340.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 424aa MW: 48232.8 Da PI: 5.1857 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 62.7 | 7.2e-20 | 127 | 179 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k r +Wt +LH++F+++v+qL G + Pk+i elm+v+gLt+ +++SHLQk R Solyc09g010340.1.1 127 KYRTKWTDQLHDKFMKVVRQL-GDGNCYPKKIFELMQVPGLTRIQIASHLQKCR 179 5699*****************.999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 11.74 | 1 | 79 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 4.6E-4 | 7 | 97 | No hit | No description |
PROSITE profile | PS51294 | 11.731 | 124 | 183 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.75E-16 | 125 | 180 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-20 | 126 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-18 | 127 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-6 | 129 | 178 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MSMLKKKQKI DVMILNVHPS NIYSFDLLAQ AVVLDVITLV VYDELNELVA KKALDKGAYL 60 SLKKPFDEEI LQYLWQIVLK RNMQREKARE GSEKNRDQIT IDDIYNNDNI NEGESQSNAI 120 NTVVRRKYRT KWTDQLHDKF MKVVRQLGDG NCYPKKIFEL MQVPGLTRIQ IASHLQKCRR 180 NNWRFKKEQR YVCAPSGHES KFGAMPRLQT NVLNPQRNSD EIQKGLGHSY STPNANNVFA 240 RGDNSIQQQF YRPQLQVQPY SFDIDNPFND SFLLAQNNVG MSSSQELEGS ITGNTNYKPA 300 WAFNNGDHDH AQYAYNNLNL NAVYGTTYSN NKTVSGANTG NVQVNEYNAN AENVAICSDN 360 AMMSDTYVGN VAINGVGETN TNFQQYIDES DIFATLCESD IEEADASEKE DCEAYYLNTE 420 YLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g010340.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC225121 | 2e-06 | Solanum lycopersicum chromosome 05 clone C05SLe0077B22, complete sequence | |||
GenBank | AC240183 | 2e-06 | Solanum lycopersicum chromosome 05 clone C05HBa0224J02, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888669.1 | 0.0 | two-component response regulator ARR11-like | ||||
TrEMBL | M1DY30 | 1e-153 | M1DY30_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g010340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-17 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g010340.1.1 |
Publications ? help Back to Top | |||
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