PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g009120.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 1044aa MW: 112997 Da PI: 6.7693

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g009120.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	901	922	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg F+ + L rH+ H Solyc09g009120.2.1 901 QCGICGFGFKFQVKLDRHLEWH 922 8*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.90	1.4E-42	74	197	IPR008942	ENTH/VHS
PROSITE profile	PS51391	37.904	75	203	IPR006569	CID domain
SuperFamily	SSF48464	1.96E-38	75	196	IPR008942	ENTH/VHS
SMART	SM00582	7.8E-44	78	200	IPR006569	CID domain
CDD	cd03562	1.78E-37	82	190	No hit	No description
Pfam	PF04818	1.5E-8	131	184	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	9.93	900	927	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	902	922	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006369	Biological Process	termination of RNA polymerase II transcription
GO:0006378	Biological Process	mRNA polyadenylation
GO:0006379	Biological Process	mRNA cleavage
GO:0005737	Cellular Component	cytoplasm
GO:0005849	Cellular Component	mRNA cleavage factor complex
GO:0000993	Molecular Function	RNA polymerase II core binding
GO:0003729	Molecular Function	mRNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MEMEGSRRPF DRSRLEPGPK KPRLVEAPIG TERGSNGRSF IPQRGAGNSR IRASDKGGDS 60 ENSDSIRGSF QQQTQHQELV SQYKTALAEL TFNSKPIITN LTIIAGENLQ AAKAIAATIC 120 NNIIEVPTEQ KLPSLYLLDS IVKNIGRDYI KYFATRLPEV FSKAYRQVEP SVHPGMRHLF 180 GTWKGVFPPQ QLQLIEKELG FTTGVNGSSS GTSRPDPQAQ RPAHSIHVNP KYLEARQRLQ 240 QSTRAKGAAS DISSTVNVNE DAERPERTTS VSSGRSWIDP SIKRAQKEKL NEHVPEKTIS 300 AAYGDSDYAS DLPSRAAFGV GRGGERFKEQ GFDKPWYDSG AGKILSQRSS LDTKHDFQSI 360 PQKSATSDAH PQLIPSLPNR TSTLTDRSWK NSEEEEYMWD DVNNAAKDRW ASEDSDKSDL 420 ENQLRRPQSI REVGLRADSE ASADSPSAEE RGPASFGNQM SAMWSRGSHA LDGARHSASV 480 QGAPVHSEGY QTSFSGLSKV ANSVSRASYK LQTGSVHVGT QNIGPMNATL ESRGSIVQQG 540 ETLRAASPSA QSPMHHLPPS PSLITSNSNQ VINSPAEQYQ MQTSSRSDPR LSQISRRSNL 600 DPRNQYAQES LTMPSRNTIS VNSQRQHPPS LQNSSALSSS HQLRQKVQRE SLESEYSVQT 660 KNSTVPEISG FPDPSSTSSL LAAVLKSGVI GNKSSSGTTS SSLDKGALSS QASAQPHPAQ 720 FSTSGPRIPP ASVTSLSMDR NASNSPNYSQ RNVEQPPLPP GLPPTLAGTA SSQTPNAPNI 780 ASSPLSSILS TLVAKGLISA SKKDPPIYTP SDTPPQTQNL IPPASSISTP ALSAPTSSSV 840 PSSAHKDELS HSKPSAETPE VLLQSMKEEA KSLIGLVFKP DVIRNSHPAV ISDLVDDVPL 900 QCGICGFGFK FQVKLDRHLE WHSLRNPDVK LLNNSRKWYL NSGEWIAAFG GLPCGDKSEG 960 PAGGSSETSE CTETMVPADE CQCVCVLCGE FFEDFYNEES DEWMFKDAVY MSIPSESDCQ 1020 GPIVHKNCIS ESSCQELGFV LDA*

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MEMEGSRRPF DRSRLEPGPK KPRLVEAPIG TERGSNGRSF IPQRGAGNSR IRASDKGGDS  60
ENSDSIRGSF QQQTQHQELV SQYKTALAEL TFNSKPIITN LTIIAGENLQ AAKAIAATIC  120
NNIIEVPTEQ KLPSLYLLDS IVKNIGRDYI KYFATRLPEV FSKAYRQVEP SVHPGMRHLF  180
GTWKGVFPPQ QLQLIEKELG FTTGVNGSSS GTSRPDPQAQ RPAHSIHVNP KYLEARQRLQ  240
QSTRAKGAAS DISSTVNVNE DAERPERTTS VSSGRSWIDP SIKRAQKEKL NEHVPEKTIS  300
AAYGDSDYAS DLPSRAAFGV GRGGERFKEQ GFDKPWYDSG AGKILSQRSS LDTKHDFQSI  360
PQKSATSDAH PQLIPSLPNR TSTLTDRSWK NSEEEEYMWD DVNNAAKDRW ASEDSDKSDL  420
ENQLRRPQSI REVGLRADSE ASADSPSAEE RGPASFGNQM SAMWSRGSHA LDGARHSASV  480
QGAPVHSEGY QTSFSGLSKV ANSVSRASYK LQTGSVHVGT QNIGPMNATL ESRGSIVQQG  540
ETLRAASPSA QSPMHHLPPS PSLITSNSNQ VINSPAEQYQ MQTSSRSDPR LSQISRRSNL  600
DPRNQYAQES LTMPSRNTIS VNSQRQHPPS LQNSSALSSS HQLRQKVQRE SLESEYSVQT  660
KNSTVPEISG FPDPSSTSSL LAAVLKSGVI GNKSSSGTTS SSLDKGALSS QASAQPHPAQ  720
FSTSGPRIPP ASVTSLSMDR NASNSPNYSQ RNVEQPPLPP GLPPTLAGTA SSQTPNAPNI  780
ASSPLSSILS TLVAKGLISA SKKDPPIYTP SDTPPQTQNL IPPASSISTP ALSAPTSSSV  840
PSSAHKDELS HSKPSAETPE VLLQSMKEEA KSLIGLVFKP DVIRNSHPAV ISDLVDDVPL  900
QCGICGFGFK FQVKLDRHLE WHSLRNPDVK LLNNSRKWYL NSGEWIAAFG GLPCGDKSEG  960
PAGGSSETSE CTETMVPADE CQCVCVLCGE FFEDFYNEES DEWMFKDAVY MSIPSESDCQ  1020
GPIVHKNCIS ESSCQELGFV LDA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2bf0_X	1e-15	68	183	4	117	PCF11
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g009120.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246564.1	0.0	polyadenylation and cleavage factor homolog 4
TrEMBL	A0A3Q7HZ26	0.0	A0A3Q7HZ26_SOLLC; Uncharacterized protein
STRING	Solyc09g009120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4944	5	5
Representative plant	OGRP5094	3	3

Link Out ? help Back to Top
Phytozome	Solyc09g009120.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]