PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc09g007990.2.1 | ||||||||
Common Name | LOC101268308 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 520aa MW: 58198 Da PI: 6.6756 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 7e-10 | 404 | 451 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v+q+G g+W+ I + +Rt+ ++k++w+++l Solyc09g007990.2.1 404 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 451 ***************************999****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.444 | 396 | 455 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 398 | 458 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-16 | 398 | 459 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 400 | 453 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.10E-20 | 404 | 452 | No hit | No description |
Pfam | PF00249 | 9.8E-8 | 404 | 451 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 520 aa Download sequence Send to blast |
MNQNSAYRSG FASLGVWFDE SETRDDHASI SGVLCFDEKR VLKGMERKGA LYNIGSSIAS 60 KRENEINQDV LDLKRSQFEA GKIQAQNDLS TPCEDYLLDI EFAESITNLD YGSSRGLLDP 120 ILESQIPLSS CDGTDTCGMP YSAGLVVQES QSQNAMFGLT NSELHDLSRD KCESQMLVEY 180 NAVKFPTAFN PGDISNVDDV AGFFAEAAAS EKMNDSMIDH SALTSNGISF MSTATQNEGQ 240 DVNCESFDMH ESSEISPPVT SEAINIDTPV TQKRLRKPTR RYIDESSNLN AKRRKKRAEV 300 STSGAESKNK LLKVRCQKKP RAESMEMVLF SEESSYEAIQ VPFASLVNEE CDDWDASDAI 360 QVFKPHKEEP PHKEATTVVN HKDDDVTPKK LVQDGVRRKH HRLWTVSEVR KLIDGVAQYG 420 VGRWSHIKKL YFSSSVHRTP VDLKDKWRNL LKATYLQKQS KSTEKGKHNL SWRPLPKSVL 480 HRVSELANMH PYPRNRRCKS SRSPCASSSP EHSNSSNTP* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.6009 | 0.0 | cell culture| flower| leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc09g007990.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF647604 | 1e-23 | Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071244.1 | 0.0 | uncharacterized protein LOC101268308 isoform X2 | ||||
TrEMBL | A0A3Q7HWM8 | 0.0 | A0A3Q7HWM8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g007990.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9155 | 17 | 23 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-27 | TRF-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc09g007990.2.1 |
Entrez Gene | 101268308 |
Publications ? help Back to Top | |||
---|---|---|---|
|