PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g007500.2.1
Common NameLOC101251808
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family S1Fa-like
Protein Properties Length: 81aa    MW: 8975.76 Da    PI: 10.4028
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g007500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.71.1e-421480470
                S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        + ve+kG+nPGlivl+vvgglll+flvgny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  Solyc09g007500.2.1 14 KDVEVKGFNPGLIVLIVVGGLLLTFLVGNYLLYMYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 80
                        679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0081580No hitNo description
PfamPF046893.9E-411680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDFEDHDNVK NMAKDVEVKG FNPGLIVLIV VGGLLLTFLV GNYLLYMYAQ KTLPPKKKKP  60
VSKKKMKKER LKQGVSAPGE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.197431e-136flower| fruit| root| seed
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g007500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2329351e-119Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246674.16e-51DNA-binding protein S1FA
RefseqXP_015086281.16e-51DNA-binding protein S1FA-like
SwissprotQ423375e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A3Q7ISD51e-49A0A3Q7ISD5_SOLLC; Uncharacterized protein
STRINGSolyc09g007500.2.12e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Representative plantOGRP50951322
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]