PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g081960.1.1
Common NameLOC101264747
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 340aa    MW: 37706.7 Da    PI: 5.0315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g081960.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19136186155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Solyc08g081960.1.1 136 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 186
                         59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-31136194No hitNo description
SMARTSM003803.5E-37137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-30137194IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21137194IPR016177DNA-binding domain
PfamPF008474.5E-12137186IPR001471AP2/ERF domain
PROSITE profilePS5103223.63137194IPR001471AP2/ERF domain
PRINTSPR003673.6E-10138149IPR001471AP2/ERF domain
PRINTSPR003673.6E-10160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDQQTMLSSG VKYTEHRKQI TMVRPAPPVT FNGRRRSSEM NAAGPRVVRI TVTDADATDS  60
SSDEGEQGFY GRQRVRKFVN EVRIEQSSHC NGSVNGVLRN GSSSETAPVV AAAPKRRKKT  120
AGATTAASKL KVNHVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDHA  180
AIQLRGPDAL TNFATPPATK ISCSSYNSGE ESHNDQRSPK SVLRCASTSF DESQNNEEAE  240
AESLPILPSD IRDKNDISMS ENFCDLPPFE SFFPDDLFQF ENPITISDLF FEPDTLPDYN  300
NMLFGSSTTD YGFGSSSWPE EDFFQDFGDV FGSDPLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19136193159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.243440.0fruit| leaf| root
Function -- GeneRIF ? help Back to Top
  1. This study provides a clear picture of SlCRF1 and SlCRF2 expression patterns across tissues during development and in response to cytokinin and specific stresses indicating their importance in plant growth and environmental responses.[SlCRF2]
    [PMID: 24081612]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g081960.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2459481e-53Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-25f19 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245542.10.0ethylene-responsive transcription factor CRF1
TrEMBLA0A3Q7HUN90.0A0A3Q7HUN9_SOLLC; Uncharacterized protein
STRINGSolyc08g081960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.27e-52cytokinin response factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Shi X,Gupta S,Rashotte AM
    Characterization of two tomato AP2/ERF genes, SlCRF1 and SlCRF2 in hormone and stress responses.
    Plant Cell Rep., 2014. 33(1): p. 35-45
    [PMID:24081612]