PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g081610.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 304aa MW: 34690.6 Da PI: 5.4533

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g081610.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.5e-28	127	185	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +++ ++++tY+ eHnh+ Solyc08g081610.2.1 127 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTENGTFIVTYTAEHNHS 185 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-30	112	187	IPR003657	WRKY domain
PROSITE profile	PS50811	31.559	121	187	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	123	187	IPR003657	WRKY domain
SMART	SM00774	1.0E-32	126	186	IPR003657	WRKY domain
Pfam	PF03106	5.5E-24	128	184	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MDWGLQAVVI GSSSSYSANN IDFSPKLDFQ ESDHQYLSFS HEMKKEFFIS DELEELYKPF 60 YHVDGGQNML MGSSISLIPK EIIKEEKREE EQQQVVAPTS TYVPKYKKRK NEQKRVVLQL 120 KADDLSSDKW AWRKYGQKPI KGSPYPRSYY RCSSSKGCLA RKQVEQSCTE NGTFIVTYTA 180 EHNHSQPTRR NSLAGTIKSK FPNSKNTNIK KNIVKDEKIS SPHGSTSNNN LGFSPETLMI 240 DEFQEIEMND HEEIKNMFEG SDENECVSIQ EMFDGDFFAG LEDIHDGFTS SFGCNNSTFP 300 FSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-17	115	187	2	74	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00448	DAP	Transfer from AT4G23550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g081610.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238918	1e-07	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245564.1	0.0	probable WRKY transcription factor 29
TrEMBL	A0A3Q7IQH1	0.0	A0A3Q7IQH1_SOLLC; Uncharacterized protein
STRING	Solyc08g081610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5781	23	35
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	2e-35	WRKY family protein

Link Out ? help Back to Top
Phytozome	Solyc08g081610.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]