PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc08g080290.2.1 | ||||||||
Common Name | LOC101246746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 28391.9 Da PI: 5.6168 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1.1e-15 | 99 | 146 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g Solyc08g080290.2.1 99 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 146 89**9.55.6*********843...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-25 | 98 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.44 | 98 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-26 | 98 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-9 | 99 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 99 | 155 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.32E-15 | 99 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MADSQNSTKS TQIIQPPNQS SESTKIPFNT TLPPPLPPLP PPPAPPETHI QITNTLSSKL 60 ENTNTTPKTV IIPTAIMSST SSSGLGSPSR SIGGKHAVFR GIRCRSGKWV SEIREPRKTT 120 RIWLGTYPTP EMAAAAYDVA AMALKGNDAV INFPGNINSY PSLPPSPAAA DIRKAAATAA 180 ALMKIESGET TSGTQPGTDD HRSLGNVHMM ETRDHEYIDE EALFDMPNLL VDMAEAMMVS 240 PPRMSSPRSD DSPEHSDAEN LWSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 89 | 158 | 5 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.11301 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 5894154 | 0.0 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc08g080290.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP010811 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245652.1 | 0.0 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 7e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A3Q7HTS9 | 0.0 | A0A3Q7HTS9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g080290.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-33 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc08g080290.2.1 |
Entrez Gene | 101246746 |
Publications ? help Back to Top | |||
---|---|---|---|
|