PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g079800.2.1 | ||||||||
Common Name | LOC101243919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 219aa MW: 24785.6 Da PI: 8.7798 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.7 | 4.1e-23 | 111 | 153 | 1 | 43 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 ++epgrC+RtDGKkWRCs+ v++++k+CE+H+hrgr+rsrk + Solyc08g079800.2.1 111 EPEPGRCKRTDGKKWRCSKGVVQNQKYCEKHMHRGRQRSRKCM 153 69**************************************965 PP | |||||||
2 | QLQ | 42 | 2.9e-15 | 50 | 84 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Q q+L++Q +yKy+ a++PvP +L+ +i+k Solyc08g079800.2.1 50 FTFLQRQELEQQFIIYKYIEAGLPVPTHLIIPIYK 84 9999*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.3E-5 | 48 | 84 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.966 | 49 | 84 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.1E-12 | 50 | 82 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.33 | 111 | 155 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.8E-19 | 112 | 151 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MELKISPPKS IATKKVCYNV SDGGEKCSIE LGFKNLELSY SNFSTNGYGF TFLQRQELEQ 60 QFIIYKYIEA GLPVPTHLII PIYKSFTCSL KGLHDVMGYG HVCWEHKSRM EPEPGRCKRT 120 DGKKWRCSKG VVQNQKYCEK HMHRGRQRSR KCMELTNSTD ICCSDSSKIL SQSCQILQKC 180 ATGKVSDMQP LIFLKSLNNI DHNSEPDTTT LSIGLPMN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | GRQRSRKCM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g079800.2.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009276 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0165B06, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246135.1 | 1e-163 | growth-regulating factor 9-like | ||||
Swissprot | Q6AWX7 | 6e-44 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A3Q7HT15 | 1e-109 | A0A3Q7HT15_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g079800.2.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14471 | 9 | 9 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-34 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g079800.2.1 |
Entrez Gene | 101243919 |
Publications ? help Back to Top | |||
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