PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g078800.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 475aa    MW: 52982.1 Da    PI: 7.7122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g078800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2844.3e-871134733374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+   +   + ++  lpp++ ++ + + ++ a+k+fse+sP+++f
  Solyc08g078800.1.1 113 DQIFQASELLLAGQFSNAQMILARLNQQLSPIGKPSRRAAFYIKEALQLPFLL--PCTSTFLPPRSPTPFDCVLKMDAYKAFSEISPLIQF 201
                         67899999999*************************************99998..566666899999999********************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                          ++t NqaIlea+  +e++HiiDfdi+ G+QW +++q+L s ++++ sl+iT+++sp+++++ e+  ++e L++fA+  g++fe +v+  +
  Solyc08g078800.1.1 202 MNFTSNQAILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSNRKATSLKITAFASPSTHHSIEIGIMHESLTQFANDAGIRFELEVINLD 292
                         ***************************************************************************************9777 PP

                GRAS 185 rle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         +++  +  l++Lr ++ Ea+a+n+ +   +    + + +s    +L+++k+lsPkvvv  e+ +++++ ++ +++++al+yy +l+ s++a
  Solyc08g078800.1.1 293 SFDpkSYPLSTLRSSECEAIAINFPIWSISSC--PFAFPS----LLHCMKQLSPKVVVSLERGCERTELPLKHHLIHALQYYETLLASIDA 377
                         5541155678999999********99655554..666666....*********************************************66 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             + +  +k+Er l++++i+n++  + ++      ++  Wr+ + +aGF+pv++s+ ++ qa+++++++++ g++v++++ slvl+Wk+
  Solyc08g078800.1.1 378 A-NITPDIGKKIERSLFQPSIENMILGRLRS----SDRMPPWRNLFASAGFSPVAFSNMTEIQAECVVKRTQVGGFHVQKRQTSLVLCWKQ 463
                         6.46779999****************99888....78899*************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                         ++L+s+  Wr
  Solyc08g078800.1.1 464 QELLSAVTWR 473
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.48985453IPR005202Transcription factor GRAS
PfamPF035141.5E-84113473IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MANQTQFQNA ACVNIFGSSS YDINQEQPPP KRHNSGTLGG ALLPKVPFFD ANCDFMLRKQ  60
PLGQMQPQVN LLPPHQFQPK PLIVPKLEAA GGGGNGNLMV PRHQLQEQQF IYDQIFQASE  120
LLLAGQFSNA QMILARLNQQ LSPIGKPSRR AAFYIKEALQ LPFLLPCTST FLPPRSPTPF  180
DCVLKMDAYK AFSEISPLIQ FMNFTSNQAI LEALGDAEQI HIIDFDIGFG AQWSSFMQEL  240
PSSNRKATSL KITAFASPST HHSIEIGIMH ESLTQFANDA GIRFELEVIN LDSFDPKSYP  300
LSTLRSSECE AIAINFPIWS ISSCPFAFPS LLHCMKQLSP KVVVSLERGC ERTELPLKHH  360
LIHALQYYET LLASIDAANI TPDIGKKIER SLFQPSIENM ILGRLRSSDR MPPWRNLFAS  420
AGFSPVAFSN MTEIQAECVV KRTQVGGFHV QKRQTSLVLC WKQQELLSAV TWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2811747225378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.23720.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g078800.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119050.0Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0036L21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333836.10.0GRAS transcriptional regulator HAM
RefseqXP_025888052.10.0GRAS transcriptional regulator HAM isoform X1
TrEMBLA0A3Q7IP280.0A0A3Q7IP28_SOLLC; Uncharacterized protein
STRINGSolyc08g078800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69861931
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-103GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]