PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g078590.1.1
Common NameLOC101250916
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 282aa    MW: 32137.2 Da    PI: 8.5573
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g078590.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.4e-05155177123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C k+F+++  L +H   H
  Solyc08g078590.1.1 155 HQCGICYKVFKTSQALGSHKTIH 177
                         79*****************9887 PP
2zf-C2H2110.0014214236123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp Cgk F +   L  H r+H
  Solyc08g078590.1.1 214 HECPFCGKFFQSGQALGGHKRSH 236
                         79**********99999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871431IPR007087Zinc finger, C2H2
SMARTSM003550.62426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.55E-10153177No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4153180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-6155177IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64155182IPR007087Zinc finger, C2H2
SMARTSM003550.32155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-5204236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.55E-10209236No hitNo description
PROSITE profilePS5015710.159214236IPR007087Zinc finger, C2H2
PfamPF139122.1E-10214237IPR007087Zinc finger, C2H2
SMARTSM003550.039214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEKHKCKLCS KKLLNGKALG GHMRSHLIPL PLPPKTPPLN PDSGGRSEST LSLCSSENHE  60
DKMVEEKDFN YELRENRKKS YRMIDPEFLD RESDTESEKN TENRRRRCKR NHERINKVNE  120
NISDFRSLNL YSDDSDIAMC LLMLSRDSKS NPKQHQCGIC YKVFKTSQAL GSHKTIHKNR  180
NNYDDDDHEV EEQPRKISSK KKLKLVSNVN EKLHECPFCG KFFQSGQALG GHKRSHLIVV  240
VSSSTMSGSC SSTSSANLPN RLIDLNMPAP IEDNEFQQEF A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g078590.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385686e-06Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246154.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7HS970.0A0A3Q7HS97_SOLLC; Uncharacterized protein
STRINGSolyc08g078590.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-20C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]