PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g078190.1.1 | ||||||||
Common Name | LOC101267548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 36263.7 Da PI: 6.3189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 183 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAaka+++a+ ++g Solyc08g078190.1.1 183 HYRGVRQRP-WGKYAAEIRDPRRRG--SRVWLGTFDTAIEAAKAYDKAAFTMRG 233 7********.**********96554..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 182 | 242 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.42E-30 | 183 | 241 | No hit | No description |
Pfam | PF00847 | 5.8E-14 | 183 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 183 | 247 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 183 | 243 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.644 | 183 | 241 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 184 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 207 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEYVDEFFAL EKIRTHLLGE FSPRTLKFGA ELTSSKCSDT VTESCDSESA SSGSLPFDFF 60 FDIEADLFQF GAGVSNSSSE SANSVYNRTD FVKIESEPSI SSSDYEENQS KRFQFKSEPQ 120 VFIDLTSPKS RKLCSASDRK PSLKIDLPPV KKYEWIDFGN SAQSNPIVSV PVKQIREAEE 180 KRHYRGVRQR PWGKYAAEIR DPRRRGSRVW LGTFDTAIEA AKAYDKAAFT MRGSKAILNF 240 PLEVGKTLSY SSSAVEGGVK RRREAVETEE EKVVKKCKEE ESCPLTPSSW NFVFEQNCNG 300 MFNLPPLSPL SPHLSCSQLI QI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-29 | 182 | 244 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.17766 | 0.0 | fruit| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g078190.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010783 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315543.1 | 0.0 | ethylene response factor B.13 | ||||
Swissprot | Q40478 | 8e-58 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A3Q7HUM0 | 0.0 | A0A3Q7HUM0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g078190.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-37 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g078190.1.1 |
Entrez Gene | 101267548 |
Publications ? help Back to Top | |||
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