PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g078180.1.1 | ||||||||
Common Name | LOC101267832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26454.6 Da PI: 5.2396 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 133 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g Solyc08g078180.1.1 133 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 183 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 132 | 191 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-30 | 132 | 191 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-23 | 133 | 193 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.788 | 133 | 191 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-38 | 133 | 197 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 133 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-10 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MYSNCELEND FSVLESIRRY LLEDWEAPLT SSENSTSSEF SRSNSIESNM FSNSFDYTPE 60 IFQNDILNEG FGFGFEFETS DFIIPKLESQ MSIESPEMWN LPEFVAPLET AAEVKVETPV 120 EMTTTTTKPK AKHYRGVRVR PWGKFAAEIR DPAKNGARVW LGTYETAEDA ALAYDKAAFR 180 MRGSRALLNF PLRINSGEPD PVRVGSKRSS MSPEHCSSAS STKRRKKVAR GTKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-41 | 130 | 198 | 2 | 70 | ATERF1 |
3gcc_A | 1e-41 | 130 | 198 | 2 | 70 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8173 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5892760 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g078180.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245806.1 | 1e-173 | ethylene-responsive transcription factor 2 | ||||
Swissprot | O80338 | 4e-56 | EF101_ARATH; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A3Q7INQ3 | 1e-172 | A0A3Q7INQ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g078180.1.1 | 1e-173 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 3e-41 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g078180.1.1 |
Entrez Gene | 101267832 |
Publications ? help Back to Top | |||
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