PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc08g077960.2.1 | ||||||||
Common Name | LOC101246747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 539aa MW: 60252.4 Da PI: 7.314 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Solyc08g077960.2.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 ****************66666***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.7E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 9.32E-17 | 6 | 54 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.8E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 6.3E-11 | 283 | 367 | IPR028020 | ASX homology domain |
Pfam | PF16550 | 1.8E-9 | 299 | 375 | IPR032368 | UCH-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 539 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLINYTPLHA RAEPDDLEDY 60 RVSRFKNFTV KNKEVKMLKR KKSHDNPEIG ILPEYHQGFH RKALDEDTSN RSSSGSAVSN 120 TESYGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSVEKLTKD LYTILHEQQS 180 SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKHHSSNEA 240 YSQLTTPPVN ISKGVNSSNL VIQRTQKPTV QGVEHEQFKR SKDHLEKLQI LGHHNSPLCH 300 IDLKDVLNYE EFTRHLSSDE QQQLLKYLPP VDSFSPPESL RSMFESSQFE ENLSSFQKLL 360 AEGVFDNSLS GVTVEECRNL KRFMLCYLMK SKWVEQVNLL KDMKCKNSSS SSEVAGGRNV 420 FGTGHSVNMK RPRDGQHPKN LGVNTTMKSP KRVAMKNSYE QQKEIMENDG SCFSPKSLFA 480 LPSENSFRFT NESSDQDLLL DVPSNSSFPQ AELLLPTASF AAQASTSSSS IYPHLIHP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 78 | 83 | KRKKSH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc08g077960.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245820.1 | 0.0 | GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-148 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A3Q7HSL0 | 0.0 | A0A3Q7HSL0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g077960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 | Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-152 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc08g077960.2.1 |
Entrez Gene | 101246747 |
Publications ? help Back to Top | |||
---|---|---|---|
|