PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g077450.2.1

Common Name

LOC101256112

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 374aa MW: 41444.3 Da PI: 5.7809

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g077450.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	25	5.2e-08	50	85	5	40
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C CGn a+ C ++ C+ CC C+ hv Solyc08g077450.2.1 50 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHVL 85 568*******************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MAASSPALSN SADNAPSPAP APAVPTATAA AAFSSLPTTN ASKNLRGLNK PKCIKCGNVA 60 RSRCPFQSCK SCCAKAQNPC HIHVLKGGST LPDKIPASGS PVVDQQSTEA SHAGSSHRAV 120 SLRQLSTNFA QFNNLQTPLR SRRPLSRKDA QVINEWRFMQ LKEYRESNIA AENEAFDRYM 180 QNIGLLEEVF GVNSAEDENN EDGSTEDENE AMMNRVKLQL RSDPVRIENT RKRMQYVIDQ 240 GLRKGRKLEA GDNATDLNDL DALGKKKKAK TAEAEHVAAF ADLMDKLNKA RNEEDLKVCW 300 EMKSQLFNQP KKEKQTEPED AEVSNEQSLK TSDPPIMPWG HSQPKWFSTV TIDDEELRRI 360 NEEFDSLEDI EEL*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MAASSPALSN SADNAPSPAP APAVPTATAA AAFSSLPTTN ASKNLRGLNK PKCIKCGNVA  60
RSRCPFQSCK SCCAKAQNPC HIHVLKGGST LPDKIPASGS PVVDQQSTEA SHAGSSHRAV  120
SLRQLSTNFA QFNNLQTPLR SRRPLSRKDA QVINEWRFMQ LKEYRESNIA AENEAFDRYM  180
QNIGLLEEVF GVNSAEDENN EDGSTEDENE AMMNRVKLQL RSDPVRIENT RKRMQYVIDQ  240
GLRKGRKLEA GDNATDLNDL DALGKKKKAK TAEAEHVAAF ADLMDKLNKA RNEEDLKVCW  300
EMKSQLFNQP KKEKQTEPED AEVSNEQSLK TSDPPIMPWG HSQPKWFSTV TIDDEELRRI  360
NEEFDSLEDI EEL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16485	0.0	fruit\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g077450.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245851.1	0.0	uncharacterized protein LOC101256112
TrEMBL	A0A3Q7INC1	0.0	A0A3Q7INC1_SOLLC; Uncharacterized protein
STRING	Solyc08g077450.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14
Representative plant	OGRP5972	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	7e-84

Link Out ? help Back to Top
Phytozome	Solyc08g077450.2.1
Entrez Gene	101256112

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]