PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g077110.2.1

Common Name

LOC101264451

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 341aa MW: 38189.5 Da PI: 5.073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g077110.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.2	3.1e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rdkky++g+r+nratksgyWkatgkd Solyc08g077110.2.1 6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDKKYPNGSRTNRATKSGYWKATGKD 95 79**************************.99**********95334445667***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ + ++vg +ktLvfy+grap g +tdWvmheyrl Solyc08g077110.2.1 96 RKVVC-HPAVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 *.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-62	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.964	6	156	IPR003441	NAC domain
Pfam	PF02365	1.5E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DLEWFFFCPR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC HPAVVGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDVTQG TPSFQGPFAL CRVIKRNDVS LKTKDVGGVK QVGSSTSTTS 180 GAFTLVNEPP NALSDETPTQ SAYMSNDSNY STPIASPYQT TQFGDYESAI GANSANLWMS 240 SAMILDSSKE CPQGQNVSNY CPQYDFSSMT PWQPSDQSEF TSNSTFPSFR GEVELSGDLS 300 SFGCMSPYSI HGSYVGLYGN EDMTYEVFNQ NDSNRNPNLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	1	162	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-52	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16059	1e-178	flower\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g077110.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245880.1	0.0	NAC domain-containing protein 71-like
Swissprot	O49697	5e-96	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A3Q7HU20	0.0	A0A3Q7HU20_SOLLC; Uncharacterized protein
STRING	Solyc08g077110.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6256	16	35
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-97	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	Solyc08g077110.2.1
Entrez Gene	101264451

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]