PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g077060.2.1
Common NameLOC101265355
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LSD
Protein Properties Length: 146aa    MW: 15147.7 Da    PI: 7.7401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g077060.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Solyc08g077060.2.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                        ************************9 PP
2zf-LSD146.84.9e-156791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA+sV+C++C+tV
  Solyc08g077060.2.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                        ************************9 PP
3zf-LSD140.64e-13105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C+ lL+Y +GA+sV+Ca+C++V
  Solyc08g077060.2.1 105 CGNCHMLLMYQYGARSVKCAVCNFV 129
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.101.4E-522127No hitNo description
TIGRFAMsTIGR010539.8E-132555IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.03E-628111IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.7E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-10102132IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPSN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCHM LLMYQYGARS  120
VKCAVCNFVT SVGVATSTAE QKFNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.128421e-178callus| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g077060.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107879e-59Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245885.11e-101protein LOL1 isoform X2
SwissprotQ93ZB19e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A3Q7HU072e-99A0A3Q7HU07_SOLLC; Uncharacterized protein
STRINGSolyc08g077060.2.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-67lsd one like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]