PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g076710.2.1 | ||||||||
Common Name | LOC101261056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 326aa MW: 36973.3 Da PI: 7.1323 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l d++++ G +W +I+++ g++R++k+c++rw +yl Solyc08g076710.2.1 15 KGPWTSEEDEKLMDYITKNGHTNWQLIPKKAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e++++++ +lG++ W++Ia +++ gRt++++k++++++l Solyc08g076710.2.1 68 RGEFSIEEEEIIINLHSLLGNK-WSKIAGHLP-GRTDNEIKNFYNTHL 113 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.631 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.42E-11 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.549 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.67E-7 | 81 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MGRYPCCKVD ENLKKGPWTS EEDEKLMDYI TKNGHTNWQL IPKKAGLNRC GKSCRLRWTN 60 YLRPDIKRGE FSIEEEEIII NLHSLLGNKW SKIAGHLPGR TDNEIKNFYN THLRKKLLRL 120 GIDPRTHKPI SDLNLLINLS HQFTSKQNIN HHLMNNPNFP LAYALKLQAQ VTEIAKIQQL 180 VQSLFTPIST NNPLSTKFQE NYFATSSSHV ITNNVATNTH FLNALLVNSC GTIQNLDNSN 240 SCISNSSELS NYQSELNSKV DNFEGLNNNS SKTNLDYNNS LPSLITPSSP DQANDAHVNQ 300 DYDPNTFSQL NHEGIDDSFW NDIFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g076710.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010802 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246185.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9LDR8 | 1e-69 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A3Q7HTU8 | 0.0 | A0A3Q7HTU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 8e-72 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g076710.2.1 |
Entrez Gene | 101261056 |