PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g076700.1.1
Common NameLOC101261353
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 291aa    MW: 33292.8 Da    PI: 4.9444
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g076700.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.9e-201562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEde+lv+++k+ G g+W +I+++ g++R++k+c++rw +yl
  Solyc08g076700.1.1 15 KGPWTSEEDEKLVEYIKENGHGNWQLIPKRAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding55.41.4e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE+e++++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  Solyc08g076700.1.1  68 RGAFSEEEEEIIINLHSLLGNK-WSKIASHLP-GRTDNEIKNLWNTHL 113
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4671062IPR017930Myb domain
SuperFamilySSF466892.62E-3212109IPR009057Homeodomain-like
SMARTSM007176.4E-171464IPR001005SANT/Myb domain
PfamPF002494.1E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251669IPR009057Homeodomain-like
CDDcd001672.01E-131762No hitNo description
PROSITE profilePS5129427.87963117IPR017930Myb domain
SMARTSM007176.4E-1667115IPR001005SANT/Myb domain
PfamPF002494.1E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRYPCCKVD EDLKKGPWTS EEDEKLVEYI KENGHGNWQL IPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGA FSEEEEEIII NLHSLLGNKW SKIASHLPGR TDNEIKNLWN THLKKKLFKS  120
GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAELTEIA KIHIIQNIIQ VLNTPPPTLI  180
PSLQENNYPM QQFYNNNIIA PYDQIITNEP SPISKNLSDN NMIKNSSVFE NNMINNVDYN  240
SEYSSLPSLV PVTPENSVPF DQQIIDMINP SYYDDFCELE KVLNDEANIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32121174108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g076700.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108020.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246186.10.0transcription factor MYB53
SwissprotQ9S9Z21e-71MYB93_ARATH; Transcription factor MYB93
TrEMBLK4CN310.0K4CN31_SOLLC; Uncharacterized protein
STRINGSolyc08g076700.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-77myb domain protein 9
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]