PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g076590.2.1
Common NameLOC101258888
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 491aa    MW: 55016.7 Da    PI: 4.9503
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g076590.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws + +sfv++d+ efak++LpkyFkhsnf+SFvRQLn+YgF+kv ++          w+F+++ F +g+k+
  Solyc08g076590.2.1  26 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPEFAKQLLPKYFKHSNFSSFVRQLNTYGFRKVGSDL---------WKFSNDGFIRGQKH 107
                         9********************999****************************************9887.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Solyc08g076590.2.1 108 LLKNISRRKP 117
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3918110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDAGGGSPVP EITPAPMPSS NAVPPFLMKT YDMVDDPSTD KIVSWSPTDS SFVIWDPPEF  60
AKQLLPKYFK HSNFSSFVRQ LNTYGFRKVG SDLWKFSNDG FIRGQKHLLK NISRRKPAHG  120
QQQQQQLHSQ SASVGACVEV GNFGLEKEVE WLKRDKNVLM QELVKLRQHQ QTTDNQMQNM  180
VQNLQIMEQR QQQMMSFLAK AVNSPGFFAQ FVQQQNDNNK RKMEGKKKRR IRQDFPSDDH  240
SVRPADGQLV KYHPIMNETA KGMLTQITKL DSSPRLENFS NSPESPPIGD AFDGRSNSRI  300
SGVTLQEVSP AFSQPFASTT SAIAGQSSLS ANIQFSESSS PIGAQNLPPI VPFSSDMIMP  360
MPSQLQEIVP ENNMDINGTE RGNDSFMDPT LWGNGELPLE NDIFPPDLQI KWESALVDDI  420
GEPPTVTDPS WEKFLQSLYP PTETEEMGSV ETENDKTTET ELLGNGWYNV QHMEHLTEQM  480
GLLTSNTKKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-27511510129Heat shock factor protein 1
5d5v_B4e-27511510129Heat shock factor protein 1
5d5v_D4e-27511510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.215070.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g076590.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108020.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325565.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A3Q7HTQ40.0A0A3Q7HTQ4_SOLLC; Uncharacterized protein
STRINGSolyc08g076590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-127heat shock factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]