PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g076400.2.1 | ||||||||
Common Name | LOC101243626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 264aa MW: 29612.3 Da PI: 9.4662 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.6e-32 | 169 | 222 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Solyc08g076400.2.1 169 PRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 222 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-15 | 166 | 222 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 166 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-23 | 169 | 222 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 170 | 221 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MELFPAQPDL SLKISPPNIK PSSSTWKRKI TSEDDIHMDL GFCKRAHVVE STNPINTSSS 60 SCFDLSLSNN PTKPNPNSSH HLHNLQNYNI SQQNQTIIRG IPVYHQKPFN TTTTTTFPIT 120 CSPCSIINNN NIKNTISSCA STRPNFQQGG FFRSRFLSRY STKRSTRAPR MRWTSTLHAH 180 FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDRSA SSGQSEVFDN 240 LSSGDTSEEL MVDEYFDPKS KLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 170 | 224 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g076400.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009292 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0320P23, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245982.1 | 0.0 | probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 3e-64 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A3Q7HRP2 | 0.0 | A0A3Q7HRP2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076400.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2738 | 22 | 55 | Representative plant | OGRP570 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 6e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g076400.2.1 |
Entrez Gene | 101243626 |
Publications ? help Back to Top | |||
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