PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g076010.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 362aa MW: 40859.8 Da PI: 6.9213 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1e-32 | 105 | 159 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Solyc08g076010.2.1 105 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 159 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.455 | 102 | 162 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-32 | 102 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 105 | 160 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.48E-16 | 105 | 162 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 107 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.6E-24 | 205 | 251 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MTITHLLVSS IWEDVARDCT NILFSSFFAE YSTLSPTCHF SIRSSRAHIS QNSRHRLPLV 60 FSDLWKSFED FEEFGSGGFM DRMYNGGGDM GYGYENGVVM TRDPKPRLRW TADLHDRFVD 120 AVTKLGGPDK ATPKSVLRLM GLKGLTLYHL KSHLQKYRLG QQTKKQNAAE QNRENIGESF 180 RQFSLHSSGP SITSSSMDGM QGEAPISEAL RRQIDVQKRL HEQLEVQQKL QMRIEAQGKY 240 LQAILDKAQK SLSTDMNSAS AVDETRAQLT DFNIALSNLM DYVHGHNEDE TSAGKRIQDD 300 TNKDLQRSTY LTEGEQKKIM NIKLEESSVS FDLNSRSSYD FIGMNSAALE AKQFSNGRLE 360 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-18 | 105 | 158 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 105 | 158 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 105 | 158 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 105 | 158 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 105 | 158 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g076010.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009262 | 0.0 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0006A17, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245962.1 | 0.0 | myb family transcription factor PHL11 isoform X2 | ||||
Swissprot | C0SVS4 | 2e-84 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A3Q7HTE6 | 0.0 | A0A3Q7HTE6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 4e-84 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g076010.2.1 |
Publications ? help Back to Top | |||
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