PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g075950.1.1
Common NameLOC101267047
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 362aa    MW: 39859.1 Da    PI: 8.3482
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g075950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.3e-2589133145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Solyc08g075950.1.1  89 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 133
                         79****************************************986 PP
2QLQ65.51.3e-222863237
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        +FTa Q+q+L++Q+++yKyL+a++PvPp+L+++i++
  Solyc08g075950.1.1 28 PFTAVQWQELEHQAMIYKYLVAGLPVPPDLVVPIRR 63
                        9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.9E-132763IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-172862IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3432863IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76289133IPR014977WRC domain
PfamPF088794.3E-2190132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSGTSTSVVG GGGGGEGGMG YGYGYRPPFT AVQWQELEHQ AMIYKYLVAG LPVPPDLVVP  60
IRRSFEAISA RFFHHPSLGY CSYYGKKFDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM  120
HRGRNRSRKP VESQSTPQSL STSMSQITAG SSNTRGSFQN SSSGSFQNMP LYSVANSGTL  180
NYGSTGTKLQ MEPVSYGIDN KDYRYLHGIT PDADEHNLSS EASATVRSLG MRTNTDSTWV  240
LPSQISSSPM ARSKNDSQLL GSSTEMHLPN LLEPMIDATI SKRRHQHCFF GSDIDSPGTV  300
KEEQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS MSIPIAPSNF SSRSACSPND  360
T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g075950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092620.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0006A17, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070965.20.0growth-regulating factor 4-like
TrEMBLA0A3Q7HTE30.0A0A3Q7HTE3_SOLLC; Uncharacterized protein
STRINGSolyc08g075950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-50growth-regulating factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]