PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g069160.2.1 | ||||||||
Common Name | LOC101249843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 317aa MW: 36259.5 Da PI: 5.2181 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.7 | 3.5e-09 | 18 | 86 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt +e +L++ + ++ + +++ + ++W++ ++ + g++rs +qCk +we++ +y k+k +e+ Solyc08g069160.2.1 18 WTLHESVTLVNEMKATQIECGNSLASFQKWQSTVHNCNSLGVNRSLNQCKRRWESMLEQYNKVKPWESA 86 9999999999999999999****9****************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.2E-8 | 17 | 85 | No hit | No description |
PROSITE profile | PS50090 | 6.435 | 18 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MERSGGSLRT RSQAAPDWTL HESVTLVNEM KATQIECGNS LASFQKWQST VHNCNSLGVN 60 RSLNQCKRRW ESMLEQYNKV KPWESAYWDS FDEERKRELE LPEQFDFELF NAIARYLSLE 120 GEDGGGAETD PDTDPEAQQV QGNNAFLEIG PKRQRRRTKT KRYKIEERLN PWRRILNENR 180 KYEQSKMGIK HEASIDAGLE APRHENSSLE IKRETSSPEE MTELPNLSMV NKVKAEQFHV 240 DNPEELMAAT LRENAEMITA ITEGNTMDDR DCSLAGLNNF DAGRLHLIRS QGNQLIDCLG 300 KISDTLIQLC DAIHKK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.1085 | 0.0 | flower| fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g069160.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010944 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0007C12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245311.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A3Q7HSF9 | 0.0 | A0A3Q7HSF9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g069160.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8360 | 21 | 24 | Representative plant | OGRP7482 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 7e-45 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g069160.2.1 |
Entrez Gene | 101249843 |
Publications ? help Back to Top | |||
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