PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g068540.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 500aa    MW: 56980.4 Da    PI: 9.8025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g068540.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.6e-1416103598
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          + ++v+  ++l+lp kf++ehg +     t+++  ++   W v l  +k +++++l +GW+eF + + ++   f++Fk+ ++s+f  +v+
  Solyc08g068540.2.1  16 IVEPSVMDDRQLRLPDKFVQEHGDE--LLDTVKIIVPTDDFWCVGL--KKAGKMIWLHDGWQEFMEHHSVNCWYFLLFKYGQTSCF--NVH 100
                         567899999*************865..6679***************..********************************999***..999 PP

                         EE- CS
                  B3  96 vfr 98 
                         +f+
  Solyc08g068540.2.1 101 IFD 103
                         987 PP
2B367.61.8e-21268358396
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                         k+l + +v ++ +l +p +f+++++ k  +s  + l+d++g++W+v++   +++ r++l+kGW +Fv +n L +gD++vF+l ++ +  el
  Solyc08g068540.2.1 268 KILEKYNVERNYILNIPVEFVRKYMPK--TSELIELQDTDGNKWKVRC--IRRKLRVLLSKGWLNFVTDNSLLVGDVCVFELLKDvQAVEL 354
                         5565667888899***********855..5679***************..888899*************************9988777777 PP

                         EEEE CS
                  B3  93 vvkv 96 
                          +kv
  Solyc08g068540.2.1 355 ILKV 358
                         6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1611103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-1612103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.43312105IPR003340B3 DNA binding domain
SMARTSM010191.2E-813105IPR003340B3 DNA binding domain
CDDcd100179.98E-1315103No hitNo description
PfamPF023629.8E-1115103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-25262363IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-15265364IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72266364IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-23267362IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-22267362No hitNo description
PfamPF023621.5E-18269358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MESCSNSYSA GSFYVIVEPS VMDDRQLRLP DKFVQEHGDE LLDTVKIIVP TDDFWCVGLK  60
KAGKMIWLHD GWQEFMEHHS VNCWYFLLFK YGQTSCFNVH IFDLAATEID YQLRSHGNAK  120
SRDVAQELSH RKDKIVGDKG FTSSIEIVDL LETEQGPESS AKSSELLHRA KRRKIASGKI  180
KITRCYETRS RTNKLHDNGQ LLNAKNLNIS GNGSLTKPVG GKSVRRSIKT PIHSAMATGD  240
TRKSFTSKQR EKSLGRGRYD RRERAQQKIL EKYNVERNYI LNIPVEFVRK YMPKTSELIE  300
LQDTDGNKWK VRCIRRKLRV LLSKGWLNFV TDNSLLVGDV CVFELLKDVQ AVELILKVHM  360
FRNRVEENSK NLHTGSLSEP TLSTGKNCIL QFDESNHTKS SDAFKPLSSD RTNHKTDTEN  420
SFGQQQEKSV VHGSSGNRRK RGRPRDAEAN TDTENSSGQQ EEKSVVHGSL VIVVKEDDQG  480
MQKQTLIQRI HPDSKRRNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g068540.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0094820.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0073D06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774064.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A3Q7HCR60.0A0A3Q7HCR6_SOLLC; Uncharacterized protein
STRINGSolyc08g068540.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-42B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]