PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g068380.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 279aa    MW: 32051.8 Da    PI: 9.6367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g068380.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.3e-0871378128
                 NAM   8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         hP d+e++ + L k v gk+++ ++++ +v d   i  + P+++ +++k++++++     F +r++    +  +++  + g+Wk t k k+
  Solyc08g068380.2.1   7 HPMDKEMM-NNLVKYVMGKPFPGTHTVMDVdDvygIRIFSPSQILESTKGTNNNIrlmITFQNREN---CKVFASK-EAPGFWKCTPKRKS 92 
                         8*******.669999*****77766555553422266679***97555555554421133333333...3334444.457*********** PP

                 NAM  92 vlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                         +++++++++g  k+  +         ++++++ ++++W + ey l
  Solyc08g068380.2.1  93 IFDANKRHIGNVKISWYCyynvddgrDKSSSRLRQSEWQIREYYL 137
                         ****9999999887554345888554345556679********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-97151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGKSSRHPMD KEMMNNLVKY VMGKPFPGTH TVMDVDDVYG IRIFSPSQIL ESTKGTNNNI  60
RLMITFQNRE NCKVFASKEA PGFWKCTPKR KSIFDANKRH IGNVKISWYC YYNVDDGRDK  120
SSSRLRQSEW QIREYYLTSK YLPQSKVERK NVLLTMMIKI KAAAANNDND KKMQKIIRDK  180
QEIMQSLQWA EHGTHSFEPA DGDCWLCRNT CFRSILVYTQ ASASYREMWC THKMYLQLDG  240
CMSMNRVKCV VLTLMVSSSD ANGPTNMYSG VTKDSGGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g068380.2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0094810.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0066I05, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774642.11e-122uncharacterized protein LOC114078274
TrEMBLA0A3Q7HPK20.0A0A3Q7HPK2_SOLLC; Uncharacterized protein
STRINGSolyc08g068380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]