PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g063040.2.1
Common NameLOC101256995
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 468aa    MW: 51814.8 Da    PI: 9.1969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g063040.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0581103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Solyc08g063040.2.1  81 FVCEICNKGFQRDQNLQLHRRGH 103
                         89*******************88 PP
2zf-C2H212.60.00041157179123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Solyc08g063040.2.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.87E-680103No hitNo description
Gene3DG3DSA:3.30.160.601.5E-580103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01781103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94981103IPR007087Zinc finger, C2H2
PfamPF121717.3E-581103IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.87E-6152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSHVLYPQ LQNIQTQPPP NKKKRNLPGN  60
PDPEAEVVAL SPRSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVKKK  120
VYVCPEASCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALTE ESSRTIIPPP NSSTSHHLNL HTLQNFQMKQ  240
EQQQQNNDLS SQLFIQNPNG NSSNMFGAPP PHMSATALLQ KAAQIGVTSS SHTANNMSAT  300
TFFSPTTSTT TGIAMSGSGS GAGVARQYHP FENNNNNNNT NTDFVTGNTS FPDFGASVTP  360
GFMEQVHDMQ NMMATTAPSL PCTSFDEGFG RGAHLMRQGK ENNEGLTRDF LGLRAFPHHR  420
DFLSTTTPPA ALHYNMGSSA AAAAPASFDQ HHHHHQNQNQ NQLPWQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35153214364Zinc finger protein JACKDAW
5b3h_F1e-35153214364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.84600.0callus| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g063040.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4577650.0S.lycopersicum DNA sequence from clone LE_HBa-76I13, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245090.10.0protein indeterminate-domain 12
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM1AER70.0M1AER7_SOLTU; Uncharacterized protein
STRINGSolyc08g063040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]