PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g062960.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 352aa    MW: 40089.1 Da    PI: 4.6565
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g062960.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.1e-35321232102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye++ed++++++isws++ nsf+v+d+++f++++Lp++Fkhsnf+SF+RQLn+YgF+kv+ ++         weF++  F  g+k+
  Solyc08g062960.2.1  32 FLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANGGFLGGQKH 113
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Solyc08g062960.2.1 114 LLKTIKRRRN 123
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-3728121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3428121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6028121IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-193255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEDVVKVKVE EDGIPTAVLP MEGLHDVGPP PFLSKTYEMV EDSSTDQVIS WSTTRNSFIV  60
WDSHKFSTTL LPRFFKHSNF SSFIRQLNTY GFRKVDPDRW EFANGGFLGG QKHLLKTIKR  120
RRNVGQSMNQ QGSGACIEIG YYGMEEELER LKRDKNVLMT EIVKLRQQQQ STRNHIIAMG  180
EKIETQERKQ VQMMSFLAKI FSNPTFLQQY LDKHVHRKDK QRIEVGQKRR LTMTPSATGS  240
DQPMNYSSSH QESEAELASI EMLFSAAMDN ESSSNVRPDS VVTANGTDME PVADDIWEEL  300
LSEDLISGDR AAEEVVVVEQ PEFDVEVEDL VVKTPEWGEE LQDLVDQLGF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-233012118120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120LKTIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.138070.0callus| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g062960.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0115510.0Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0087H10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325030.10.0heat shock factor protein HSF30 isoform X1
RefseqXP_025888470.10.0heat shock factor protein HSF30 isoform X1
RefseqXP_025888471.10.0heat shock factor protein HSF30 isoform X1
SwissprotP411520.0HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A3Q7IJA60.0A0A3Q7IJA6_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000212340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-114heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]