PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g062490.2.1

Common Name

LOC101248996

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 182aa MW: 20616.6 Da PI: 6.012

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g062490.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.3e-31	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+ Solyc08g062490.2.1 118 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDSRYVITTYEGVHNHQ 176 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	104	178	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-28	110	178	IPR003657	WRKY domain
PROSITE profile	PS50811	31.755	113	178	IPR003657	WRKY domain
SMART	SM00774	7.7E-36	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MGGNFSSSSS MDANNSSANM FDGSFTPLLN SPDSDDHFSN NLINFELSDI FEIDNWPVQQ 60 PDPTLVPHYS NYAANQVVNT RSSTTYHEEP SNNVGSSSER REVKDKVAFR TLSQIEILDD 120 GYKWRKYGKK MVKNSPNPRN YYRCSVEGCP VKKRVERDKE DSRYVITTYE GVHNHQGPSL 180 F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	108	179	7	78	Probable WRKY transcription factor 4
2ayd_A	2e-25	106	178	2	74	WRKY transcription factor 1
2lex_A	2e-25	108	179	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g062490.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011071	1e-154	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0146P15, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245065.1	1e-134	probable WRKY transcription factor 75
Refseq	XP_015085209.1	1e-134	probable WRKY transcription factor 75
TrEMBL	A0A3Q7HPW5	1e-125	A0A3Q7HPW5_SOLLC; Uncharacterized protein
STRING	Solyc08g062490.2.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	6e-40	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Solyc08g062490.2.1
Entrez Gene	101248996

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]