PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g062210.2.1

Common Name

LOC101246742

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 326aa MW: 35659.7 Da PI: 9.0734

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g062210.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.6	3.7e-32	184	238	3	58
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++IlkRRq Rakle+++kl k rkpylheSRh+hA++R+RgsgGrF Solyc08g062210.2.1 184 PIYVNAKQYSAILKRRQVRAKLEAQNKL-VKDRKPYLHESRHRHAMKRARGSGGRF 238 9*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	24	No hit	No description
SMART	SM00521	1.0E-36	180	241	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.462	181	241	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.5E-28	184	238	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.4E-24	184	206	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	186	206	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.4E-24	215	238	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLSFSKKGGP GKEGQSFAPL FVSCSSMWNS SDKAEYAPSK KVLTGVESAL EHHSDIKKSE 60 CQFQDQDSTS TLSTGQSNHV EAAMGKSNTV LQNVAVHPGW GGTYEVQAES GTNASRSGES 120 DTNTLPQPQV NHNHPMACVS YPFADTYFGR LVTAYGSNAI IYPQMVGVTS TRVALPLECT 180 ESLPIYVNAK QYSAILKRRQ VRAKLEAQNK LVKDRKPYLH ESRHRHAMKR ARGSGGRFLN 240 TKNMQESKPS SPMHDRNIFK RQAGGNLSSS MVQHSESGSW GTSTQSGSDV TSIFSGDNMF 300 QQPEFRVSGF PFHIQEAEDF LHVGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	184	252	4	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	231	RHRHAMKRAR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.9831	0.0	cell culture\| fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g062210.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009518	0.0	Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0067I16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245059.1	0.0	nuclear transcription factor Y subunit A-8
TrEMBL	A0A3Q7HMA4	0.0	A0A3Q7HMA4_SOLLC; Uncharacterized protein
STRING	Solyc08g062210.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4800	20	27
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	3e-46	nuclear factor Y, subunit A8

Link Out ? help Back to Top
Phytozome	Solyc08g062210.2.1
Entrez Gene	101246742

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]