PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g061140.2.1
Common NameLOC101262135
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 336aa    MW: 37905.9 Da    PI: 4.9095
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g061140.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.2e-10270317653
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         +++k qle+Le+++++++ p+ +++  + + ++L+ r+V  WF  rR 
  Solyc08g061140.2.1 270 RLKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRRRVLKWFEERRS 317
                         57899******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977262322IPR001356Homeobox domain
SuperFamilySSF466894.15E-10264327IPR009057Homeodomain-like
CDDcd000861.59E-7265316No hitNo description
SMARTSM003892.2E-4268326IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-9270319IPR009057Homeodomain-like
PfamPF000461.9E-7270317IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASSSTTLGI SIRLGCSSNE HLMLVHPRSR TNIALLFHSY SSRLVTFSRR RNNSAITSSN  60
KKKKSPPRKD TEEVGDIDED AFEALFQLLE EDLKNDELSL DDDDITEEDL AKLERELEEA  120
LKDDELLGEI DSIANENTES SMAKDEEAVA EDANGDDDDE DVDMLVKLKN WQLKKLAYAL  180
KKGRRKLNIK NLAADLCLDR AVVLEMLRNP PPNLVLLSAA LPDEPVPRML EAASKPLETV  240
PIEMSDAVKP DAKVETPVHV MQSNWSAQKR LKKVQLETLE QVYRRSKRPT NAMISSIVHV  300
TNLPRRRVLK WFEERRSEEG VPAHRLPYQP SSISE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14863RRRNNSAITSSNKKKK
2179186LKKGRRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.110440.0callus| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g061140.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092650.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245032.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V58e-69OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A3Q7HP780.0A0A3Q7HP78_SOLLC; Uncharacterized protein
STRINGSolyc08g061140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94282327
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.12e-67overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]