PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g048390.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 388aa    MW: 42947.3 Da    PI: 6.4275
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g048390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.11.8e-39602032135
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ +++ + +   ++e++ss+++++s++   
  Solyc08g048390.1.1  60 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLEAFPDTLQlSDEKKSSEQGFDSADvem 150
                         689*************************************************************555553334555555555555555778 PP

                 TCP  89 .....kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               +++++++ ++s++s+ s l+l++ +sr kar+ra+er +ek + k++
  Solyc08g048390.1.1 151 dddlhYNQQQQPCCSNSETSKGSGLSLSRsDSRLKARERAKERATEKEKEKEN 203
                         888877777888999999999999*****9************99999988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3961200IPR005333Transcription factor, TCP
PROSITE profilePS5136931.16762120IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.142180199IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEIRTDECK FPRMSNKEDE QYQQYDVDDV GEVKKSSGLG GIVKFYGRPS SRIVRVSRAS  60
GGKDRHSKVL TSKGLRDRRV RLSVNTAIQF YDLQDRLGCD QPSKAVEWLL KAAAPSIAEL  120
PPLEAFPDTL QLSDEKKSSE QGFDSADVEM DDDLHYNQQQ QPCCSNSETS KGSGLSLSRS  180
DSRLKARERA KERATEKEKE KENKSCIVGQ HHQNMHPGSS FTELLTGGMS DNNTSPNGGS  240
IHQNTARQWS TNPLEYFTSG LLGPSATRGI DNQIYLGNPL QPLRPMFSIT GEHRAELQNF  300
PFGGDNLVPG VTSSNTSTNY NEYNLNFSIS SSSSSGFNRG TLQSNSSSTL PHYQRFSPTD  360
GSYLGSTTEY DARLHLFYGA CVNLFFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2167121155Putative transcription factor PCF6
5zkt_B3e-2167121155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.147640.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g048390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963410.0Solanum lycopersicum TCP transcription factor 24 (TCP24) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233831.10.0TCP transcription factor 24
TrEMBLG3BGW30.0G3BGW3_SOLLC; TCP transcription factor 24
STRINGSolyc08g048390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]