PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g029090.2.1

Common Name

LOC101264140

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 585aa MW: 66127.8 Da PI: 9.2944

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g029090.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.5	2.1e-12	5	94	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ ++++++k++ +p +f+ ++g + + le ++g W+v+l +++ g+ +l +GW++F + + g f++F+++g+s f Solyc08g029090.2.1 5 FFKIILSPHASKLN---IPDEFVIKYGAD--LRDVVFLEVPTGAIWKVEL-LQNSNGTKYLNNGWNQFKEYYSIAIGYFLLFQYNGNSHF--S 89 78888888888776...*******877..445788999******.566666689************************9999..8 PP EEEE- CS B3 94 vkvfr 98 v +f+ Solyc08g029090.2.1 90 VCIFD 94 88887 PP
2	B3	58.1	1.6e-18	482	579	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89 f ++p++v+++ +l +p +f+++ ++ e++ + l+ ++grsW+ kl ++ +s+ + ++GW++Fv +n+Lke D++vF+l++ + Solyc08g029090.2.1 482 FTVSMLPAYVSRNFQLEIPADFFKKRVNE--EETIVNLRVSNGRSWRAKL-FDIQSNCpKMESSGWRDFVIDNNLKEHDTCVFELNDGiEP 569 677899***************887544..5568***********.544444448999********************988888 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 l v++fr+ Solyc08g029090.2.1 570 MLLDVTIFRA 579 8888888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-19	2	96	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.688	2	96	IPR003340	B3 DNA binding domain
CDD	cd10017	7.19E-15	3	94	No hit	No description
SuperFamily	SSF101936	3.34E-19	3	96	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.8E-10	5	94	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-12	5	96	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.9E-20	479	580	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-20	479	579	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.76E-19	480	578	No hit	No description
Pfam	PF02362	3.3E-16	482	579	IPR003340	B3 DNA binding domain
SMART	SM01019	6.7E-14	482	580	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.057	482	580	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MPPQFFKIIL SPHASKLNIP DEFVIKYGAD LRDVVFLEVP TGAIWKVELL QNSNGTKYLN 60 NGWNQFKEYY SIAIGYFLLF QYNGNSHFSV CIFDLSASEI EYLSGPNEHE PPVSRPNCLA 120 ERHREKPDVG EDLTYATQKR KKSKRNGHSN EVVDPSTSKV TTTNQHRTVD CRYPLRSKQR 180 KDVKIEKGDV EEGHCNEALD PSTSKVHSKK RTAASLDASN CRYPLRSKQL KEVKVVKGDV 240 EDHCNKIHLV ADPSATKMTT TVRHHEKKTS ASFDTSHCRY PLRNKQLKEV KPGKTNAEKD 300 LLYVAQKAKR KKANNVKLEK GDAEERSKVG DPSASTTTNQ HNEKKTTTSL DASHCRCPLR 360 SKQHKEVKLE QWEAGGNMHN KTPVADSPYC RSQNPSLPAS SPSCQPVRVK LEKPDNLFCA 420 AEKVKGRETN NVKLDTGDLE GNLVAASYKG KYSTASEMTV LGKKKMLPSE TQNRDMYFNP 480 HFTVSMLPAY VSRNFQLEIP ADFFKKRVNE EETIVNLRVS NGRSWRAKLF DIQSNCPKME 540 SSGWRDFVID NNLKEHDTCV FELNDGIEPM LLDVTIFRAT TPVS*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MPPQFFKIIL SPHASKLNIP DEFVIKYGAD LRDVVFLEVP TGAIWKVELL QNSNGTKYLN  60
NGWNQFKEYY SIAIGYFLLF QYNGNSHFSV CIFDLSASEI EYLSGPNEHE PPVSRPNCLA  120
ERHREKPDVG EDLTYATQKR KKSKRNGHSN EVVDPSTSKV TTTNQHRTVD CRYPLRSKQR  180
KDVKIEKGDV EEGHCNEALD PSTSKVHSKK RTAASLDASN CRYPLRSKQL KEVKVVKGDV  240
EDHCNKIHLV ADPSATKMTT TVRHHEKKTS ASFDTSHCRY PLRNKQLKEV KPGKTNAEKD  300
LLYVAQKAKR KKANNVKLEK GDAEERSKVG DPSASTTTNQ HNEKKTTTSL DASHCRCPLR  360
SKQHKEVKLE QWEAGGNMHN KTPVADSPYC RSQNPSLPAS SPSCQPVRVK LEKPDNLFCA  420
AEKVKGRETN NVKLDTGDLE GNLVAASYKG KYSTASEMTV LGKKKMLPSE TQNRDMYFNP  480
HFTVSMLPAY VSRNFQLEIP ADFFKKRVNE EETIVNLRVS NGRSWRAKLF DIQSNCPKME  540
SSGWRDFVID NNLKEHDTCV FELNDGIEPM LLDVTIFRAT TPVS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24109	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g029090.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009359	0.0	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0054I14, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244892.1	0.0	uncharacterized protein LOC101264140
TrEMBL	A0A3Q7HK77	0.0	A0A3Q7HK77_SOLLC; Uncharacterized protein
STRING	Solyc08g029090.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13290	12	15
Representative plant	OGRP2051	14	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-21	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc08g029090.2.1
Entrez Gene	101264140

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]