PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g013690.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 325aa    MW: 36671.8 Da    PI: 8.0697
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g013690.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.25.9e-3253158199
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                         f+kv tpsdv+k++rlv+pk++ae++     +++++++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Solyc08g013690.1.1  53 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNNKGGLLLNFEDSNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGa 143
                         89****************************966667889*************************************************776 PP

                         SS.SEE..EEEEE-S CS
                  B3  86 gr.sefelvvkvfrk 99 
                         g+ s+ +l++ ++r+
  Solyc08g013690.1.1 144 GElSKHRLFIDWRRR 158
                         999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-4148161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-3150159IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-2551141No hitNo description
PfamPF023621.5E-2953158IPR003340B3 DNA binding domain
SMARTSM010191.9E-2153159IPR003340B3 DNA binding domain
PROSITE profilePS5086314.38153159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNFFGSVVGE EEASSSSYNS QQLKRPSSST TTELMLMDSS STCDALVERE HMFDKVVTPS  60
DVGKLNRLVI PKQHAEKYFP LDSSSNNKGG LLLNFEDSNG KPWRFRYSYW NSSQSYVMTK  120
GWSRFVKEKK LDAGDVVSFQ RGAGELSKHR LFIDWRRRPH HENGNNQFML PHQFSDGRLF  180
YYPTTFSSNL LLEGGSNIVH PPNYYNPQSY MYEIGNRSYN ISNGTVINAN PLKNEIRWGG  240
CSSTTTTGNY VEPRVFDSVP VVQGKVAAKR FRLFGVNMDC PMDQDHPDTS SIPATTTVYS  300
YLNNNNSTPS EESSKKGKSF DLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-63461591114B3 domain-containing transcription factor NGA1
5os9_B9e-63461591114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g013690.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244732.10.0B3 domain-containing protein Os03g0120900
SwissprotQ9MAN14e-69NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A3Q7HIG50.0A0A3Q7HIG5_SOLLC; Uncharacterized protein
STRINGSolyc08g013690.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-71B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]