PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g008660.2.1

Common Name

LOC101267143

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 350aa MW: 40182.7 Da PI: 6.2991

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g008660.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	4e-49	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+++yL+kk++++k++l +vi+evd++k+ePwd+++k+k +++wy Fs++dkky++g+r+nrat++g+Wkatg+ Solyc08g008660.2.1 11 VPPGFRFHPTEEELLHYYLRKKIANEKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYLFSHKDKKYPSGSRTNRATAAGFWKATGR 100 69**************************.9***********964444222455**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk ++ + + +g++ktLvfykgrap+g k dW+mheyrl Solyc08g008660.2.1 101 DKVIYG-NCKRIGMRKTLVFYKGRAPHGLKLDWIMHEYRL 139 *9.8889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-55	8	173	IPR003441	NAC domain
PROSITE profile	PS51005	54.237	11	173	IPR003441	NAC domain
Pfam	PF02365	4.5E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKIANEKIDL DVIREVDLNK LEPWDIQEKC 60 KIGSTPQNDW YLFSHKDKKY PSGSRTNRAT AAGFWKATGR DKVIYGNCKR IGMRKTLVFY 120 KGRAPHGLKL DWIMHEYRLD DISTPQHQPS LNFCASESAA LEEGWVVCRV FKKKSTLQSS 180 SAVSKTLIHE NTNTHHDGVL DQILMYMGRS SKQQQQHEIK SNNIVQQVNN NDNENIQFDN 240 TEDGFLQLPE LVNHHQDCNF NDEMIIMSTG NDDQHYSCMI NNYQENNEAA DHKKNGPTCD 300 WLAMVASQLN GHHLEPPTNN NTTRSNDDDV EFWSYAQSST FDPLSQFTV*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MNLSVNGQSQ VPPGFRFHPT EEELLHYYLR KKIANEKIDL DVIREVDLNK LEPWDIQEKC  60
KIGSTPQNDW YLFSHKDKKY PSGSRTNRAT AAGFWKATGR DKVIYGNCKR IGMRKTLVFY  120
KGRAPHGLKL DWIMHEYRLD DISTPQHQPS LNFCASESAA LEEGWVVCRV FKKKSTLQSS  180
SAVSKTLIHE NTNTHHDGVL DQILMYMGRS SKQQQQHEIK SNNIVQQVNN NDNENIQFDN  240
TEDGFLQLPE LVNHHQDCNF NDEMIIMSTG NDDQHYSCMI NNYQENNEAA DHKKNGPTCD  300
WLAMVASQLN GHHLEPPTNN NTTRSNDDDV EFWSYAQSST FDPLSQFTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	8	178	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	8	178	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	8	178	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	8	178	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	8	178	17	173	NAC domain-containing protein 19
3swm_B	1e-48	8	178	17	173	NAC domain-containing protein 19
3swm_C	1e-48	8	178	17	173	NAC domain-containing protein 19
3swm_D	1e-48	8	178	17	173	NAC domain-containing protein 19
3swp_A	1e-48	8	178	17	173	NAC domain-containing protein 19
3swp_B	1e-48	8	178	17	173	NAC domain-containing protein 19
3swp_C	1e-48	8	178	17	173	NAC domain-containing protein 19
3swp_D	1e-48	8	178	17	173	NAC domain-containing protein 19
4dul_A	1e-48	8	178	14	170	NAC domain-containing protein 19
4dul_B	1e-48	8	178	14	170	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g008660.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244660.1	0.0	NAC domain-containing protein 66-like
Swissprot	Q84WP6	7e-99	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	M1A517	0.0	M1A517_SOLTU; Uncharacterized protein
STRING	Solyc08g008660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-101	NAC family protein

Link Out ? help Back to Top
Phytozome	Solyc08g008660.2.1
Entrez Gene	101267143

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]