PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g008500.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 215aa MW: 23750.5 Da PI: 5.2869

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g008500.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	43.4	7.4e-14	40	71	33	63
zf-Dof 33 CkaC.rryWtkGGalrnvPvGggrrknkksss 63 k+C rryWt GG+lrn+P+Gg +rk+kksss Solyc08g008500.2.1 40 LKNCpRRYWTDGGSLRNIPIGGVSRKSKKSSS 71 5899799*********************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.6E-9	39	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-4	41	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDTSQWPQGI VVKTMEEMKI PKNTNTRKIR PQQQQNDEAL KNCPRRYWTD GGSLRNIPIG 60 GVSRKSKKSS SINIMKNNII SPKVQDIINN NNNKGVNQDL NLDFSSDFKI ISELIQVPNN 120 NSFMPIMPNI SDPNSIYLFS SNLDHGLIGS SSISDGGYEC NNIIQDLQVC TSTTTSGGIL 180 FPFEDLKQVS NTSEQSRDGE SSTNGYWDVI LGGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g008500.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888072.1	1e-154	dof zinc finger protein DOF4.6-like isoform X2
TrEMBL	A0A3Q7HL54	1e-103	A0A3Q7HL54_SOLLC; Uncharacterized protein
STRING	Solyc08g008500.2.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-11	Dof family protein

Link Out ? help Back to Top
Phytozome	Solyc08g008500.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]