PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g008280.2.1 | ||||||||
Common Name | LOC101258576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 40708.5 Da PI: 5.7771 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.4 | 1.3e-27 | 133 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ +++prsYYrCt++ +C+++k+v+rs++dp+v++itY+g+Hn++ Solyc08g008280.2.1 133 DDGYSWRKYGQKDILRAKYPRSYYRCTYRhmqNCWATKHVQRSDDDPTVFDITYRGSHNCH 193 8**************************99899***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-27 | 126 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-24 | 131 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 133 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.31 | 133 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDCASNWEYK TLINELTQGI EHTKQLREHF HSTASTFENQ ELLLQKILSS YEQSLLILNW 60 GGSTVQSPPD LPPSTGSIEY SASVDGSPKS DDKKRSDQDH HALINISKKR KSQPTWTEQV 120 KVSAESGFEG PTDDGYSWRK YGQKDILRAK YPRSYYRCTY RHMQNCWATK HVQRSDDDPT 180 VFDITYRGSH NCHHATYSAP QPTSPEKQEF ENQAVYPTGQ QYSNQVLMNL RANLRVNTND 240 LDENDPAACH FSFVPTFSSG MTDDNRHFQI SHVDDNLIGS GYSPSFVSPT TPESNYFSVS 300 TSSQMNGYGM VHNLHHSESD LTDIFSANTS TTSSPIVGDF SLDHLELDPN FPFGNPKFFS 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-17 | 133 | 192 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 110 | KKRSDQDHHALINISKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8467 | 0.0 | callus| flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates during developmental leaf senescence. {ECO:0000269|PubMed:22268143}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g008280.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011515 | 0.0 | Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0237L04, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244630.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 7e-60 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | A0A3Q7HL08 | 0.0 | A0A3Q7HL08_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g008280.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1843 | 24 | 67 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 3e-62 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g008280.2.1 |
Entrez Gene | 101258576 |