PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g007230.1.1
Common NameLOC101256610
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 200aa    MW: 22153 Da    PI: 7.5093
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g007230.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-1991141255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Solyc08g007230.1.1  91 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRIRG 141
                         69*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1391141IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2391151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-3291149IPR001471AP2/ERF domain
SMARTSM003802.0E-3891155IPR001471AP2/ERF domain
CDDcd000182.58E-3191149No hitNo description
PROSITE profilePS5103224.2591149IPR001471AP2/ERF domain
PRINTSPR003677.2E-1192103IPR001471AP2/ERF domain
PRINTSPR003677.2E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MIFENSEFMN DFELLESIRQ HLLEDWDSPV TTVLKPSVKI EPEVSVSSPE MFDFTGFTAP  60
AAAESAAEVK LEVELKTAAV KRTPASSKSM HYRGVRQRPW GKFAAEIRDP AKNGARVWLG  120
TYETAEDAAL AYDKAAYRIR GSRALLNFPL RVNSGEPEPV RVGSKRSLTT TSSESFSSSS  180
SENESMMTKK TKKVCQLYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-4287156170ATERF1
3gcc_A3e-4287156170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g007230.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244707.21e-145ethylene-responsive transcription factor 2-like
SwissprotO803386e-49EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A3Q7IEK21e-139A0A3Q7IEK2_SOLLC; Uncharacterized protein
STRINGSolyc08g007230.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-39ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]