PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g006240.1.1

Common Name

LOC101252102

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 505aa MW: 58982 Da PI: 9.786

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g006240.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46	9.6e-15	11	95	5	99
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l+p + + ++ l +p f+ ++ g++ ++ + + + g++W vk+ ++ + l++GWk+F+++n+L gD++vF+++g++ef v+ Solyc08g006240.1.1 11 LKPIHKGFKHGLKIPIGFL-KYlkGHD--QH-EHAILRSAGKTWLVKV--NGWR----LEEGWKKFANENDLHLGDMLVFRHEGDMEF--EVS 91 55667777888******.6655444..33.4555667*****..6666....9*********************999999..999 PP EE-S CS B3 96 vfrk 99 +f++ Solyc08g006240.1.1 92 IFDS 95 9986 PP
2	B3	53.7	3.7e-17	158	241	5	92
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++++ +++ l+lpk+fa e+++ + ++ +++++de+ rsW+++l +++r+ l +GW+eF an+L++gD ++F+++ + ++++ Solyc08g006240.1.1 158 IVKPYCITHSYLRLPKHFAMENDIFN-KKCDVIIRDERQRSWKLRL--ATHDCRVHLLGGWREFRVANDLNVGDYMMFEVIAN-GEKP 241 5678999999**********4432.3348***********..99999977888******************9875.3334 PP
3	B3	51.5	1.9e-16	281	363	6	92
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++++ lk++ +lp+ fa+++g+++++ l+++de+ rsW++++ + ++ +++++kGW++F +n+LkegD ++F+++++ ++++ Solyc08g006240.1.1 281 VRPYCLKRNYYRLPRGFARANGLINTKC-GLVIRDERQRSWNLRI--DTYGYGVYIAKGWSKFRVENDLKEGDRMMFEVVSN-GEKP 363 6789999************8887664.8999********..*****************************8874.4444 PP
4	B3	46.1	8.7e-15	391	473	6	89
..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 ++++ l ++ l++p k a ++ + +++ +l+++d ++ rsW+vkl r ++++ +++GW+ F +an LkegD ++F+++++ ++ Solyc08g006240.1.1 391 IRPYCLVNDFLYIPTKIAHAYRLTNKKC-DLVIRDdRRERSWNVKL--RSFGNSVCIKGGWRVFRDANCLKEGDCIMFEVVSNgEN 473 6678888999*********7665444.6777775999***..999999***********************8876343 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-20	3	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-19	4	98	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.887	7	96	IPR003340	B3 DNA binding domain
SMART	SM01019	2.6E-13	10	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-12	11	95	IPR003340	B3 DNA binding domain
CDD	cd10017	3.21E-14	11	94	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.4E-17	152	246	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-19	153	248	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.957	154	248	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-14	155	248	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-15	159	242	IPR003340	B3 DNA binding domain
CDD	cd10017	5.05E-12	160	233	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.8E-16	273	364	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-15	276	367	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.421	276	370	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-13	276	371	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-14	281	364	IPR003340	B3 DNA binding domain
CDD	cd10017	2.57E-9	292	355	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.4E-16	384	472	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.12E-15	385	477	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.688	386	481	IPR003340	B3 DNA binding domain
SMART	SM01019	3.2E-11	387	481	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-13	391	474	IPR003340	B3 DNA binding domain
CDD	cd10017	9.75E-11	399	466	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MKIPPKKPQF LKPIHKGFKH GLKIPIGFLK YLKGHDQHEH AILRSAGKTW LVKVNGWRLE 60 EGWKKFANEN DLHLGDMLVF RHEGDMEFEV SIFDSSHCDR EYAEYLQQEA GFNNVEETCK 120 KFEFKGKSNL CIMSSGEALP YAEAATYNPC SRSHFECIVK PYCITHSYLR LPKHFAMEND 180 IFNKKCDVII RDERQRSWKL RLATHDCRVH LLGGWREFRV ANDLNVGDYM MFEVIANGEK 240 PIWKFRGDKP NANIVSTRKA FPKEEFATCS SFTQSHVECI VRPYCLKRNY YRLPRGFARA 300 NGLINTKCGL VIRDERQRSW NLRIDTYGYG VYIAKGWSKF RVENDLKEGD RMMFEVVSNG 360 EKPIWKFYGT NTNKNKNKNK PFAQSHFVCI IRPYCLVNDF LYIPTKIAHA YRLTNKKCDL 420 VIRDDRRERS WNVKLRSFGN SVCIKGGWRV FRDANCLKEG DCIMFEVVSN GENTTWKYNG 480 KISTKDHKKP IDKDNVKKLV MGKH*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MKIPPKKPQF LKPIHKGFKH GLKIPIGFLK YLKGHDQHEH AILRSAGKTW LVKVNGWRLE  60
EGWKKFANEN DLHLGDMLVF RHEGDMEFEV SIFDSSHCDR EYAEYLQQEA GFNNVEETCK  120
KFEFKGKSNL CIMSSGEALP YAEAATYNPC SRSHFECIVK PYCITHSYLR LPKHFAMEND  180
IFNKKCDVII RDERQRSWKL RLATHDCRVH LLGGWREFRV ANDLNVGDYM MFEVIANGEK  240
PIWKFRGDKP NANIVSTRKA FPKEEFATCS SFTQSHVECI VRPYCLKRNY YRLPRGFARA  300
NGLINTKCGL VIRDERQRSW NLRIDTYGYG VYIAKGWSKF RVENDLKEGD RMMFEVVSNG  360
EKPIWKFYGT NTNKNKNKNK PFAQSHFVCI IRPYCLVNDF LYIPTKIAHA YRLTNKKCDL  420
VIRDDRRERS WNVKLRSFGN SVCIKGGWRV FRDANCLKEG DCIMFEVVSN GENTTWKYNG  480
KISTKDHKKP IDKDNVKKLV MGKH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g006240.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009283	1e-174	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888361.1	0.0	B3 domain-containing protein REM17-like isoform X1
TrEMBL	A0A3Q7HK07	0.0	A0A3Q7HK07_SOLLC; Uncharacterized protein
TrEMBL	M1AKH5	0.0	M1AKH5_SOLTU; Uncharacterized protein
STRING	Solyc08g006240.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171
Representative plant	OGRP2682	2	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	5e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc08g006240.1.1
Entrez Gene	101252102

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]