PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g006220.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 28600.9 Da PI: 10.0295 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 18 | 95 | 11 | 99 |
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k+ ++ +p f+ ++ g+++ ++ + ++g++W vk+ ++ + l++GWk+F+k+n+L+ gD ++Fk++g++ef v++f++ Solyc08g006220.2.1 18 YKH-CIKIPIGFL-KYlkGLNH---IKQAILRSRGKKWLVKV--TGWR----LEEGWKKFAKENDLQLGDLLIFKHEGDMEF--EVSIFDS 95 444.599*****9.66665553...44555677*********..5555....99**********************999999..9999986 PP | |||||||
2 | B3 | 51.9 | 1.3e-16 | 154 | 232 | 5 | 87 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ +++++++l++p +f++++g+ +++ +++l de+ rsW+v l + ++ +++GW +F kangL+egD+ F+l+++ Solyc08g006220.2.1 154 TIRRYTFTKAILYFPMRFVKSNGLMSRS--EMILVDEKQRSWSVLL--GQMEHHFGIKRGWPQFRKANGLQEGDTYKFELTNN 232 4678999***************998555..8***************..88888899***********************9764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-19 | 5 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.985 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.14E-17 | 8 | 94 | No hit | No description |
SMART | SM01019 | 2.7E-17 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-12 | 17 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-18 | 144 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-18 | 148 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-13 | 149 | 242 | No hit | No description |
PROSITE profile | PS50863 | 12.901 | 150 | 243 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-13 | 151 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-15 | 154 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MKVASKKPRF FKPIQPGYKH CIKIPIGFLK YLKGLNHIKQ AILRSRGKKW LVKVTGWRLE 60 EGWKKFAKEN DLQLGDLLIF KHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GNYVDATSKK 120 VEKDLRHKTS DMTTPISQTP ASTSADADPH FISTIRRYTF TKAILYFPMR FVKSNGLMSR 180 SEMILVDEKQ RSWSVLLGQM EHHFGIKRGW PQFRKANGLQ EGDTYKFELT NNGTIPIIHM 240 SKYSGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g006220.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009283 | 1e-170 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888305.1 | 1e-173 | putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A3Q7IDZ7 | 0.0 | A0A3Q7IDZ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g006220.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 | Representative plant | OGRP2682 | 2 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 9e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g006220.2.1 |
Publications ? help Back to Top | |||
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