PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g005870.1.1 | ||||||||
Common Name | LOC101250614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 32799.7 Da PI: 7.9964 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.4e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll +++k++G g W++ +++ g+ R++k+c++rw +yl Solyc08g005870.1.1 14 KGSWTKKEDLLLTEYIKEYGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62 799*******************99*********99************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w++ Solyc08g005870.1.1 68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNT 111 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.096 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.04E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.902 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 66 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-9 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK EYGEGTGWRS LPKKAGLLRC GKSCRLRWVN 60 YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN TSLLKKLKAQ 120 GNEPREHKSQ AKKRRRKEEK ANVSSQINRK NNNENKKKMK KEKIVEKHNI EDEEATKIEE 180 QPHAQDFAQP VSDSNHNFTS SCSNQDGTSS STSSSEIHSS SQNTEYHNQD EIFEKLQVID 240 ELLLNDNCLF QPEKCIEFNN NENHMLFEEV YEEYFQLVSE NSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 1e-25 | 14 | 141 | 2 | 123 | MYB3 |
3zqc_D | 1e-25 | 14 | 141 | 2 | 123 | MYB3 |
3zqc_G | 1e-25 | 14 | 141 | 2 | 123 | MYB3 |
3zqc_J | 1e-25 | 14 | 141 | 2 | 123 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | KKRRRK |
2 | 134 | 159 | RRKEEKANVSSQINRKNNNENKKKMK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g005870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009299 | 3e-11 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLm0006K11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244688.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-58 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A3Q7HGY8 | 0.0 | A0A3Q7HGY8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g005870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-59 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g005870.1.1 |
Entrez Gene | 101250614 |
Publications ? help Back to Top | |||
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