PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g065260.2.1
Common NameLOC101252413
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 597aa    MW: 65076.2 Da    PI: 7.1825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g065260.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31242299260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  +++++ei+Y+g+H+h+k
  Solyc07g065260.2.1 242 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-EGQITEIVYKGSHDHPK 299
                         8****************************************.***************85 PP
2WRKY105.62.6e-33417475159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Solyc07g065260.2.1 417 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 475
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-26234300IPR003657WRKY domain
SuperFamilySSF1182901.83E-24236300IPR003657WRKY domain
PROSITE profilePS5081122.355236300IPR003657WRKY domain
SMARTSM007743.4E-33241299IPR003657WRKY domain
PfamPF031069.3E-24242298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37402477IPR003657WRKY domain
SuperFamilySSF1182902.75E-29409477IPR003657WRKY domain
PROSITE profilePS5081138.595412477IPR003657WRKY domain
SMARTSM007749.0E-39417476IPR003657WRKY domain
PfamPF031066.0E-26418475IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MEDSHSQQQQ LHSTSEQQLR DGTNSSGGFR HNAAGSNGGA KYKLMTPAML PISRSACITI  60
PPGLSPSSFL ESPVLLSNIK AEPSPTTGSF SKFQTVQGSG GAAAFLLTRG YASGNTYTER  120
KASCFEYKYA GGSSSTSGSL ATEHVISTGL NQQHNEPLEE VQDQCYPQLL VPSSLAKHEM  180
ETSKELSLSA PINVDASSKE ESLYEPINVD AMNPRGQSSA SMQGSHADHK DVLSVTSERS  240
SDDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFER SPEGQITEIV YKGSHDHPKP  300
QLSRRFSPGA LMSVQEDKCE KEVCFRGQEV YVEDKFNTNV QTSKTEPSST PVSPQQADTD  360
GLEGAGSQMH GTNDDMDEDD QFAKRRKMDG GMDITPVIKP IREPRVVVQT VSEVDILDDG  420
YKWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAK  480
NNNHEMTGSS PVTGSSRIRA GETNSLSLDL GVSTGYRLDN GNNGQLHTLH HQVQVSRSGM  540
MLVQPAAVAA RYGIVHGGMS RFGAIDNRVQ GPSFETLPLQ PSTQSLQNYG KILLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37242478878Probable WRKY transcription factor 4
2lex_A6e-37242478878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.67930.0flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g065260.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244048.10.0probable WRKY transcription factor 20
TrEMBLM1C0Z40.0M1C0Z4_SOLTU; Uncharacterized protein
STRINGSolyc07g065260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-148WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]