PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g063940.1.1
Common NameGRAS2
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 584aa    MW: 64966.4 Da    PI: 6.2823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g063940.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.97.2e-1272135821373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL++cA+a+++++l   ++l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y+al+++e +     + l+++++++e++P+l
  Solyc07g063940.1.1 213 LKELLIACARALAENNLDDFEKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GWDLLSYMHILYEICPYL 300
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l  +g++La + e++++p+ef++
  Solyc07g063940.1.1 301 KFGYMAANGAIADACRNENRIHIIDFQIAQGTQWLTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLAVVGKKLAAISEKFNIPVEFHA 391
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     +++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rf eal+yysa+f+s+
  Solyc07g063940.1.1 392 -VPVFAPEVTRDMLDVRPGEALAVNFPLTLHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFQEALDYYSAMFESI 481
                         .6888999*********************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++l r+ +eri+vE+++l+r+ivnv+aceg er+erhe l+kW+ r+++aGF+++pls+++++ +k+l+r ++ + y++ e++g+++lgW
  Solyc07g063940.1.1 482 DVTLERDRKERINVEQHCLARDIVNVIACEGMERVERHELLGKWKLRFTMAGFHQYPLSSYVNSVIKSLMRCYS-EHYTLVEKDGAMLLGW 571
                         *********************************************************************99888.66************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r+L+s+SaW
  Solyc07g063940.1.1 572 KKRNLISASAW 582
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.966187564IPR005202Transcription factor GRAS
PfamPF035142.5E-124213582IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MESHNLYGYG ATDVNLPYSY SMTTTPSIPN RLLGILKFDS GNSPNSPFAN YNDPGTPTTL  60
SDSLEQHSST ENISGTSPCS NSSRDYNHYF CRPSPSPDIH HNNLLVYSGD NSLLQYANHS  120
HNMKHALLQL ETALMGPEEV TTSSPSAGEI QQPQASGGQR SGMWHQDGQV PYRIETQPSH  180
VSVFGISGDI IQSEEHHKPM VDYPSQGIPF GNLKELLIAC ARALAENNLD DFEKLIAKAR  240
SAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGWDLLSYM HILYEICPYL  300
KFGYMAANGA IADACRNENR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPY VRITGIDDPV  360
SKYARGDGLA VVGKKLAAIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLTL  420
HHTPDESVDV TNPRDELLRM VKSFSPKVVT LVEQESNTNT APFFPRFQEA LDYYSAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGMERVERHE LLGKWKLRFT MAGFHQYPLS  540
SYVNSVIKSL MRCYSEHYTL VEKDGAMLLG WKKRNLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-622175838375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.137430.0callus| flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Function -- GeneRIF ? help Back to Top
  1. GRAS2 plays a vital role in regulating fruit weight in tomato.
    [PMID: 29359472]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g063940.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3998250.0Lycopersicon esculentum GRAS2 (GRAS2) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001293105.10.0GRAS2 protein
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLQ00LP60.0Q00LP6_SOLLC; GRAS2
STRINGSolyc07g063940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-168GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Huang G, et al.
    A root-knot nematode secretory peptide functions as a ligand for a plant transcription factor.
    Mol. Plant Microbe Interact., 2006. 19(5): p. 463-70
    [PMID:16673933]
  4. Mayrose M,Ekengren SK,Melech-Bonfil S,Martin GB,Sessa G
    A novel link between tomato GRAS genes, plant disease resistance and mechanical stress response.
    Mol. Plant Pathol., 2006. 7(6): p. 593-604
    [PMID:20507472]
  5. Li M, et al.
    Silencing GRAS2 reduces fruit weight in tomato.
    J Integr Plant Biol, 2018. 60(6): p. 498-513
    [PMID:29359472]