PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g063410.2.1 | ||||||||
Common Name | JA2L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40091.7 Da PI: 7.5851 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 3e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeel+v+yL++kv+g++++l ++i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Solyc07g063410.2.1 14 LPPGFRFYPTDEELLVQYLCRKVAGHDFSL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKV 103 79***************************9.89***************7777799************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Solyc07g063410.2.1 104 ITT-DGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 *99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-67 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGVQEMDPLT QLSLPPGFRF YPTDEELLVQ YLCRKVAGHD FSLQIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTDGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPTTKTGSSR LDDWVLCRIY KKNSGGQKSS CSDLQNKDIS 180 HASSSSSSSQ FDDMLESLPA IEDRYFSLPR VNSIRNFQQN DKINLQQLSS GNFDWAAMAG 240 LNSFPELRTG NQVPTPGNQT PVLINTNQYH NHNDNLNNFN EFFANSTALN FHGEVKFEGG 300 VDQEVESSVR AQRLNSVNPG FFQENSTGFS SSYTNSVPDP FGIRYPTQTV NMGFTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.11740 | 0.0 | callus| flower| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g063410.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306107.1 | 0.0 | JA2-like | ||||
Swissprot | A0A3Q7HH64 | 0.0 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | M1BP49 | 0.0 | M1BP49_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g063410.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-129 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g063410.2.1 |
Entrez Gene | 101248026 |